Factsheet for Solyc11g007960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070308	Potato	cytosol	70.33	94.79
VIT_13s0019g05290.t01	Wine grape	cytosol	69.51	67.32
KRG92113	Soybean	cytosol	45.94	61.58
Bra005805.1-P	Field mustard	cytosol	61.18	59.84
CDY11290	Canola	cytosol	61.18	59.84
CDY58438	Canola	cytosol	61.18	59.84
KRH34674	Soybean	cytosol	61.18	59.72
AT5G04420.3	Thale cress	cytosol	61.79	59.14
KRG92111	Soybean	cytosol	15.65	56.2
Os02t0822800-01	Rice	cytosol	52.64	49.9
TraesCS6B01G450700.1	Wheat	cytosol	52.64	48.87
HORVU6Hr1G093000.5	Barley	cytosol	52.85	48.69
TraesCS6D01G389800.2	Wheat	cytosol	52.44	48.22
OQU85983	Sorghum	cytosol	50.41	47.42
GSMUA_Achr9P23600_001	Banana	cytosol	53.25	46.62
TraesCS6A01G406400.1	Wheat	cytosol	52.64	44.97
Zm00001d051876_P002	Maize	nucleus	50.61	41.92
Solyc01g099350.2.1	Tomato	extracellular	46.75	34.38
Solyc01g067480.2.1	Tomato	mitochondrion	29.88	22.37
Solyc05g024410.2.1	Tomato	cytosol, extracellular, plastid	13.41	20.25
Solyc11g007320.1.1	Tomato	cytosol	18.7	18.36
Solyc03g114960.2.1	Tomato	nucleus	19.31	17.53
Solyc03g111390.2.1	Tomato	nucleus	16.87	12.28
Solyc01g100600.2.1	Tomato	cytosol	11.18	11.02
Solyc05g055610.2.1	Tomato	cytosol	17.07	8.45

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	UniProt:K4D557	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2
PFAM:PF01344	PFAM:PF07646	PFAM:PF13415	PANTHER:PTHR23244	PANTHER:PTHR23244:SF336	SMART:SM00612
SUPFAM:SSF50965	SUPFAM:SSF90257	EnsemblPlantsGene:Solyc11g007960.1	EnsemblPlants:Solyc11g007960.1.1	UniParc:UPI000276A5BB	SEG:seg

Description

No Description!

Coordinates

chr11:+:2181483..2185661

Molecular Weight (calculated)

53867.0 Da

IEP (calculated)

5.797

GRAVY (calculated)

-0.248

Length

492 amino acids

Sequence
(BLAST)

001: MGSDGQNWYL GLSYDQWVPL SVAGPTPAAR YKHAAVTVDG KLYIIGGSRN GRYLSDIQVF DLKSLTWSTI KLKSGVLPAT SGHNMILWEN KLLFLAGHSK
101: DVSDTVTVRF IDLQSYECGV IETFGKLPVA RGGQSVTLVG SKLIMFGGED QHRRLLNDIS VLDLETMTWS TVETMQTSPA PRFDHTAALH ADRYLLILGG
201: CSHSIFFNDL HVLDLETMEW SQPQLQGDLV SPRAGHAGVT IGDNWYIVGG GDNKSGVPEI LMLNMSKLVV SVLATVKGRD PLASEGLSVS SASLDGENFL
301: VAFGGYNGKY NNEVYVMRPK PRDVLHPKIL QSPAAEAAAA SVRAAYALIK PEKYLSERED SSFKEVHVDN TQQSLLAEIS ALGEQKKALE SSLADIRAEN
401: ADLRNKIEDV NTTHADLSKE LQSVQGQLIS ERSRCAKLEA QIAELQKTLE SMQSIEEEVQ ALRKEKSKLD RDMDASSVQK QGSGGAWKWI TG

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.