Factsheet for VIT_13s0019g05290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070308	Potato	cytosol	51.57	71.78
KRG92111	Soybean	cytosol	18.9	70.07
Solyc11g007960.1.1	Tomato	cytosol	67.32	69.51
KRH34674	Soybean	cytosol	67.91	68.45
KRG92113	Soybean	cytosol	48.62	67.3
CDY58438	Canola	cytosol	64.57	65.21
Bra005805.1-P	Field mustard	cytosol	64.17	64.81
CDY11290	Canola	cytosol	64.17	64.81
AT5G04420.3	Thale cress	cytosol	65.35	64.59
Os02t0822800-01	Rice	cytosol	54.13	52.99
HORVU6Hr1G093000.5	Barley	cytosol	55.31	52.62
TraesCS6B01G450700.1	Wheat	cytosol	54.72	52.45
TraesCS6D01G389800.2	Wheat	cytosol	54.92	52.15
OQU85983	Sorghum	cytosol	52.76	51.24
GSMUA_Achr9P23600_001	Banana	cytosol	55.71	50.36
TraesCS6A01G406400.1	Wheat	cytosol	55.31	48.78
Zm00001d051876_P002	Maize	nucleus	51.97	44.44
VIT_14s0060g02410.t01	Wine grape	plastid	48.43	36.5
VIT_12s0057g01080.t01	Wine grape	cytosol	13.98	21.71
VIT_05s0020g01740.t01	Wine grape	mitochondrion	28.54	20.22
VIT_14s0060g01090.t01	Wine grape	nucleus	20.47	16.25
VIT_13s0074g00620.t01	Wine grape	cytosol	17.72	16.19
VIT_17s0000g05150.t01	Wine grape	cytosol	16.73	14.05
VIT_17s0000g10130.t01	Wine grape	nucleus	17.32	12.9
VIT_10s0116g01770.t01	Wine grape	cytosol	18.11	8.83

Protein Annotations

EntrezGene:100253103	wikigene:100253103	Gene3D:2.120.10.80	MapMan:35.1	EMBL:AM437230	ProteinID:CAN60660
ProteinID:CAN60660.1	ProteinID:CBI31383	ProteinID:CBI31383.3	ncoils:Coil	UniProt:D7TM16	EMBL:FN595998
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	EntrezGene:LOC100253103	wikigene:LOC100253103	PFAM:PF01344	PFAM:PF13415	PANTHER:PTHR23244
PANTHER:PTHR23244:SF336	SUPFAM:SSF50965	TIGR:TC62596	UniParc:UPI00015C9743	ArrayExpress:VIT_13s0019g05290	EnsemblPlantsGene:VIT_13s0019g05290
EnsemblPlants:VIT_13s0019g05290.t01	unigene:Vvi.15017	RefSeq:XP_002264719	RefSeq:XP_002264719.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:7110799..7119629

Molecular Weight (calculated)

56128.3 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.404

Length

508 amino acids

Sequence
(BLAST)

001: MDIDNWHSEL EYDQWLRLPV SGPRPSARYK HAAAVVDEKL YISGGSRNGR YLSDVQVFDL RSLAWSALKL KMESNADKVE ENNLQEVFPA TSGHNMIKWG
101: NKLLILGGHS KNSSDGVTVR AIDLETQQCG VIKTSGKVPV ARGGQSVTLV GSRLIMFGGE DRSRHLLNDV HVLDLDTMTW DVVEATQTPP APRFDHTAAV
201: HAERYLLIFG GCSHSIFFND LHILDLQTME WSQPQIQGDL VTPRAGHAGT TIDENWYIVG GGDNRSGTPE TLVFNMSKLG WSVLTRVKER DPLASEGLNV
301: CSASVNGEKH LVTFGGYNGK YNNEVFIMKP KPTDSTRPKI FQSPAAAAAA ASVTAAYALA KSEKLDFIET EDSNFGGVKE NNSAQDFSIE INAIREENKV
401: LESSVAEVKA ENSRLKEKID DINGTYAELS KELHSVQGQL VVERSRCSKL EAQIAELQKM LETLQSIEDE VQLLRRQKSM LERNMEVAAA QRQGSGGVWR
501: WIAGTPNT

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.