Factsheet for VIT_17s0000g10130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039402	Potato	nucleus	78.45	79.14
KRH63715	Soybean	nucleus	76.39	78.94
Solyc03g111390.2.1	Tomato	nucleus	77.42	78.11
KRH54239	Soybean	nucleus	75.37	77.88
CDY34042	Canola	nucleus	75.37	77.53
AT5G50310.1	Thale cress	nucleus	75.51	77.33
KXG26585	Sorghum	nucleus	69.06	71.58
TraesCS2B01G361300.1	Wheat	nucleus	68.92	71.1
Os04t0483600-01	Rice	nucleus	68.92	71.0
TraesCS2A01G321200.1	Wheat	nucleus	68.77	70.95
TraesCS2D01G342300.1	Wheat	nucleus	61.0	68.31
GSMUA_Achr10P...	Banana	nucleus	48.39	66.67
HORVU2Hr1G083780.14	Barley	nucleus, plastid	64.52	65.97
Zm00001d003259_P006	Maize	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	65.25	62.68
Bra000617.1-P	Field mustard	endoplasmic reticulum	75.37	53.93
CDX83165	Canola	nucleus	75.81	52.12
VIT_12s0057g01080.t01	Wine grape	cytosol	10.56	22.02
VIT_13s0019g05290.t01	Wine grape	cytosol	12.9	17.32
VIT_14s0060g01090.t01	Wine grape	nucleus	15.4	16.41
VIT_13s0074g00620.t01	Wine grape	cytosol	13.05	16.01
VIT_17s0000g05150.t01	Wine grape	cytosol	14.08	15.87
VIT_05s0020g01740.t01	Wine grape	mitochondrion	15.69	14.92
VIT_14s0060g02410.t01	Wine grape	plastid	14.52	14.69
VIT_10s0116g01770.t01	Wine grape	cytosol	15.1	9.88

Protein Annotations

EntrezGene:100256953	wikigene:100256953	Gene3D:2.120.10.80	MapMan:35.2	EMBL:AM457395	ProteinID:CAN61297
ProteinID:CAN61297.1	ProteinID:CBI14871	ProteinID:CBI14871.3	ncoils:Coil	UniProt:D7SHB2	InterPro:DUF4110
EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
EntrezGene:LOC100256953	wikigene:LOC100256953	PFAM:PF13415	PFAM:PF13418	PFAM:PF13422	PANTHER:PTHR23244
PANTHER:PTHR23244:SF410	SUPFAM:SSF117281	UniParc:UPI0001985171	ArrayExpress:VIT_17s0000g10130	EnsemblPlantsGene:VIT_17s0000g10130	EnsemblPlants:VIT_17s0000g10130.t01
unigene:Vvi.19635	RefSeq:XP_002276501	RefSeq:XP_002276501.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:12313687..12324005

Molecular Weight (calculated)

78154.5 Da

IEP (calculated)

5.262

GRAVY (calculated)

-0.917

Length

682 amino acids

Sequence
(BLAST)

001: MGKKTKKPGK GKEKTEKKTA KAEEKRARRE NKKISEEDDI DAILLSIQKE EAKKKEVHID ENVPAPTPRS NCSLTMNPLK ETELILYGGE FYNGNKTFVY
101: GDLYRHDIEK QEWKLISSPN SPPPRSSHQA VAWKNYLYIF GGEFTSPNQE CFHHYKDFWV LDLKTNQWEQ LNLKGCPSPR SGHRMVLYKH KIIVFGGFYD
201: TLREVRYFND LHVFDLDQFK WQEIKPRLGS MWPSARSGFQ FFVFQDEIFL YGGYSKEVSS DKNNSEKGIV HSDMWSLDPR TWEWNKVKKS GMPPGPRAGF
301: SMCVHKKRAV LFGGVVDMEV EGDVMMSLFL NELYGFQLDT HRWYPLELRK EKSTKDKVKK SSDKKYNGAT LDNKIGSIDL EKCEENDGDD NLESHEEAAD
401: LESSIDEISR HMTTNITVND GGPSIKSDGR PHESGAQLDL QNSISSEIVK PCGRINCSMV VGKDTLYIYG GMMEVKDQEI TLDDLYCLNL SKLDEWKCII
501: PASKSEWIEA SEEEDEDEDE DDSEDEDCNS GSNSDETDDD DDVEAKDGSR SLEMGDAVAI IKGEGKNLRR KEKRARIEQI RANLGLSDSQ RTPIPGETLK
601: DFYKRTNLYW QMAAHEHTQH TGKELRKDGF DLAEARYREL KPILDELAIL EAEQKAEEAE GVETSMRKRG NKKNSKRSAP QK

Best Arabidopsis Sequence Match ( AT5G50310.1 )
(BLAST)

001: MGKKTKKPGK GKEKTERKTA KADEKKARRE GKKLSPEDDI DAILLNIQKE EAKKKEVHVE ENVAAPSPRS NCSLTINPLK ETELILYGGE FYNGQKTYVY
101: GDLYRYDVEK QEWKLVSSPN SPPPRSSHQA VAWKNYLYIF GGEFTSPNQE RFHHYKDFWM LDVKTNQWEQ LNLKGCPSPR SGHRMVLYKH KIIIFGGFYD
201: TLREVRYYND LYVFDLDQYK WQEIKPKPGA MWPTARSGFQ FFVYQDEIFL YGGYSKEVSS EKSSEKGIVH ADLWSLDPRT WEWNKVKKIG MPPSSRAGFS
301: VCVHKKRALL FGGVVDMEME GDVMMSLFLN ELYGFQLDNR RWYPIELRKE KSSKDKAKKT LEAKPVASNN DDEMDSTEED ESLAMIEQTD GVGSSDGISE
401: RMATNLTVDG NRSDKSKALQ GAKTRLDPQV SVSEEVVKPC GRINSCMVVG KDTLYIYGGM MEIKDKEVTL DDLYSLNLSK LDEWKCIIPT TETEWVEVSD
501: DEEGDEDDDE DDSEDEGNSE ESDDEDDDEE VEAMDVDGSV KVGVVVAMIK GQGKSLRRKE KRARIEQIRA NLGLSDSQRT PVPGETLKDF YKRTNMYWQM
601: AAYEHTQHTG KELRKDGFDL AETRYLELKP ILDELAILEA EQKAEEAEGP EASSSSRKGG IAKKKR

Arabidopsis Description

AT5g50310/MXI22_1 [Source:UniProtKB/TrEMBL;Acc:Q945N1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.