Factsheet for VIT_10s0116g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060067	Potato	cytosol	46.26	64.52
Bra000803.1-P	Field mustard	cytosol	59.6	62.92
Solyc05g055610.2.1	Tomato	cytosol	59.69	62.58
KRH51088	Soybean	cytosol	64.49	62.51
CDY21313	Canola	cytosol	59.12	62.1
AT4G04670.1	Thale cress	cytosol	58.93	61.71
CDX90875	Canola	cytosol	59.5	61.45
KRH02069	Soybean	cytosol	35.22	59.58
GSMUA_Achr6P29460_001	Banana	cytosol	55.85	54.55
TraesCS2A01G223200.1	Wheat	cytosol	54.03	51.79
TraesCS2B01G248800.1	Wheat	cytosol	53.93	51.7
TraesCS2D01G229200.1	Wheat	cytosol	53.84	51.61
HORVU2Hr1G046680.19	Barley	cytosol	53.93	51.42
KXG36320	Sorghum	cytosol, nucleus, peroxisome	52.4	50.51
Zm00001d021624_P002	Maize	mitochondrion	52.02	50.0
VIT_12s0057g01080.t01	Wine grape	cytosol	6.91	22.02
VIT_14s0060g02410.t01	Wine grape	plastid	12.38	19.14
VIT_13s0074g00620.t01	Wine grape	cytosol	10.17	19.06
VIT_13s0019g05290.t01	Wine grape	cytosol	8.83	18.11
VIT_14s0060g01090.t01	Wine grape	nucleus	10.56	17.19
VIT_17s0000g05150.t01	Wine grape	cytosol	9.5	16.36
VIT_17s0000g10130.t01	Wine grape	nucleus	9.88	15.1
VIT_05s0020g01740.t01	Wine grape	mitochondrion	9.5	13.81

Protein Annotations

EntrezGene:100257307	wikigene:100257307	Gene3D:2.120.10.80	Gene3D:3.30.1960.10	Gene3D:3.40.50.150	MapMan:35.1
ProteinID:CCB48217	ProteinID:CCB48217.1	UniProt:F6H7M2	EMBL:FN595248	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	InterPro:IPR015915	InterPro:IPR030382	InterPro:IPR036602	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_2	EntrezGene:LOC100257307	wikigene:LOC100257307	InterPro:MeTrfase_TRM5/TYW2	PFAM:PF02475	PFAM:PF02676
PFAM:PF07646	PFAM:PF13418	PFscan:PS51684	PANTHER:PTHR23245	PANTHER:PTHR23245:SF25	InterPro:SAM-dependent_MTases
SUPFAM:SSF111278	SUPFAM:SSF117281	SUPFAM:SSF53335	UniParc:UPI0002109012	ArrayExpress:VIT_10s0116g01770	EnsemblPlantsGene:VIT_10s0116g01770
EnsemblPlants:VIT_10s0116g01770.t01	RefSeq:XP_002268884	RefSeq:XP_002268884.1	RefSeq:XP_010655398.1	SEG:seg	InterPro:tRNA_yW-synthesising
InterPro:tRNA_yW-synthesising-like_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:1036091..1050314

Molecular Weight (calculated)

114857.0 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.137

Length

1042 amino acids

Sequence
(BLAST)

0001: MEFEKRKAAT LASMGSTEPD KSPKGTIDRH IVPLLSAINR HNSYFTTSSC SGRISILSQP SPAATNAHKK ARGGSWLFIT HDLADPNSVL ALLFPTTGCS
0101: SQHDDLVFRF EPFIVAVECK DVAAAQLLVS TAVSCGFRES GITSVSKRVM VAVRCSIRLE VPLGGGGRVL VSPEYVRYLV GIANDKMETN RRRTEGFLQA
0201: LQSSGFVESF NGGAGLDGAM GGDEHGCSDC KDGDANSERI IAEKESGSVG VLGCSLSIVQ MEIIDEPVEK LFLWGHSACT LDTINHKKVI VFGGFGGMGR
0301: HARRNDAFVL DPLHGTLKAV NAEGTPSPRL GHTSSMVGDL MFIIGGRADP ENILDNVWVL DTAKNEWRRL ECTGSVFPPR HRHAAAVLGS KIYVFGGLNN
0401: DAISSSLHVL DTDNLQWNEI RVHGEWPCAR HSHSLVAYGS KLFMFGGCND GKALGDLYSF DVQTCLWKKE VASGRTPYAR FSHSMFIYKN YLGIIGGCPV
0501: RQHCQELALL DLQHHVWRNE ILDSVFKVLF VRSTASVVGD DLIMIGGGAS CYAFGTKFSG PMKINLLQLV SLHDTLVPSE MEEKHAIHQY EGVKEKKNGD
0601: LHGAQNGIAQ TLTESPDMDF EPGISIVDVE KQMVAVYWVL QLERKYAKLG KDILKKFGWL DLGRKVHSRE DRRHICFPVT EKFCTIFNEK DHDSSDAFEV
0701: PNELHLYKPS TGEGVLLNDI SFVTALRLLK ECGATKLADE VVEVRRTPSS PLKIMSEAVA SLIKHRGLSS QLLEQLPTRW ERLGDIVVLP VTSFKDPIWD
0801: SIGDELWPII AKSLNTCRLA RQGRVAPSGT RDSTLEILVG DNGWVDHCEN GILYSFDATK CMFSWGNLSE KLRMGCLNCR DEVIVDLFAG IGYFVLPFLV
0901: SAKAKLVYAC EWNPHAVEAL QHNLLANSVA DRCIILEGDN RLTAPKGVAD RVCLGLLPSS EGSWATAVRA LRTEGGMLHV HGNAKDSEEG SWSEHVSKSI
1001: CDLARSEGYD WEVSVEHVER VKWYAPHIRH LVADVRCRQI QR

Best Arabidopsis Sequence Match ( AT4G04670.1 )
(BLAST)

001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR

Arabidopsis Description

tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.