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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000803.1-P Field mustard cytosol 95.67 96.15
CDX90875 Canola cytosol 95.46 93.86
AT4G04670.1 Thale cress cytosol 83.37 83.12
VIT_10s0116g01770.t01 Wine grape cytosol 62.1 59.12
Solyc05g055610.2.1 Tomato cytosol 57.16 57.04
KRH51088 Soybean cytosol 60.99 56.28
PGSC0003DMT400060067 Potato cytosol 42.24 56.09
KRH02069 Soybean cytosol 31.55 50.81
GSMUA_Achr6P29460_001 Banana cytosol 51.92 48.27
TraesCS2A01G223200.1 Wheat cytosol 52.32 47.75
TraesCS2B01G248800.1 Wheat cytosol 52.22 47.65
TraesCS2D01G229200.1 Wheat cytosol 52.12 47.56
HORVU2Hr1G046680.19 Barley cytosol 52.32 47.48
KXG36320 Sorghum cytosol, nucleus, peroxisome 51.21 46.99
Zm00001d021624_P002 Maize mitochondrion 50.6 46.31
CDY28023 Canola cytosol 7.06 21.41
CDY35957 Canola cytosol 6.75 20.49
CDY05697 Canola cytosol 6.55 20.19
CDY48738 Canola cytosol 6.55 20.19
CDX85317 Canola cytosol 6.25 19.25
CDX86322 Canola cytosol 6.65 19.19
CDY26745 Canola nucleus 9.98 19.15
CDY19228 Canola nucleus 9.88 18.96
CDX83831 Canola nucleus 10.18 18.91
CDX96712 Canola mitochondrion 9.98 18.89
CDX75043 Canola cytosol 8.57 18.64
CDY49133 Canola mitochondrion, nucleus 9.17 18.57
CDY67946 Canola cytosol 6.55 18.52
CDX75048 Canola cytosol, plastid 9.27 18.47
CDY19142 Canola cytosol, peroxisome, plastid 6.45 18.23
CDY52048 Canola plastid 6.45 18.23
CDY64894 Canola cytosol, mitochondrion 4.74 18.22
CDY42440 Canola mitochondrion 8.87 18.18
CDX84132 Canola cytosol 9.07 18.18
CDY40708 Canola cytosol 11.9 17.72
CDY27769 Canola cytosol 11.79 17.57
CDY05166 Canola cytosol, nucleus, plastid 11.79 17.57
CDY18777 Canola cytosol 11.69 17.44
CDY18797 Canola cytosol 11.69 17.42
CDX74147 Canola cytosol, nucleus, plastid 11.49 17.12
CDX73059 Canola cytosol, mitochondrion 9.68 16.49
CDX96521 Canola mitochondrion 10.08 16.23
CDY05568 Canola plastid 10.89 16.19
CDY30169 Canola cytosol 5.24 16.1
CDY25029 Canola cytosol, nucleus, plastid 10.79 15.97
CDY36630 Canola cytosol 5.44 15.74
CDY51408 Canola cytosol 5.44 15.74
CDY11290 Canola cytosol 7.96 15.71
CDY58438 Canola cytosol 7.96 15.71
CDY08215 Canola cytosol 5.44 15.52
CDY49014 Canola cytosol 5.24 15.16
CDX94790 Canola cytosol 5.14 14.87
CDX96969 Canola peroxisome 5.14 14.87
CDY30681 Canola cytosol 5.14 14.66
CDY28366 Canola cytosol 6.85 14.56
CDY34042 Canola nucleus 9.68 14.48
CDY20194 Canola cytosol 6.75 14.35
CDY03958 Canola cytosol 6.65 14.16
CDY24063 Canola cytosol, mitochondrion 4.03 14.08
CDY56199 Canola cytosol 5.85 14.04
CDY03963 Canola cytosol 6.55 13.92
CDY13903 Canola mitochondrion 9.38 13.8
CDY56200 Canola endoplasmic reticulum, extracellular, plasma membrane 6.35 13.61
CDY65743 Canola cytosol, peroxisome, plastid 5.75 13.48
CDX92073 Canola cytosol 6.35 13.35
CDX92598 Canola mitochondrion 9.17 13.0
CDY43093 Canola cytosol 0.91 11.11
CDX75045 Canola cytosol 9.07 10.73
CDX83165 Canola nucleus 9.78 9.78
CDY60589 Canola cytosol 7.36 9.22
CDY43091 Canola cytosol 0.71 6.19
CDY72137 Canola cytosol 0.81 5.19
CDY65828 Canola cytosol 1.31 4.0
Protein Annotations
KEGG:00350+2.1.1.28Gene3D:2.120.10.80Gene3D:3.30.1960.10Gene3D:3.40.50.150MapMan:35.1GO:A0A078G994
UniProt:A0A078G994EnsemblPlants:CDY21313ProteinID:CDY21313ProteinID:CDY21313.1GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0008033GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00015653001InterPro:IPR015915InterPro:IPR030382InterPro:IPR036602
InterPro:Kelch-typ_b-propellerInterPro:Kelch_1InterPro:MeTrfase_TRM5/TYW2PFAM:PF01344PFAM:PF02475PFAM:PF02676
PFAM:PF13418PFAM:PF13964PFscan:PS51684PANTHER:PTHR23245PANTHER:PTHR23245:SF25MetaCyc:PWY-6342
MetaCyc:PWY-7286InterPro:SAM-dependent_MTasesSUPFAM:SSF111278SUPFAM:SSF117281SUPFAM:SSF53335UniParc:UPI0004EEBEBB
SEG:segInterPro:tRNA_yW-synthesisingInterPro:tRNA_yW-synthesising-like_sf:::
Description
BnaC03g29970DBnaC03g29970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G994]
Coordinates
chrLK032119:+:506980..511551
Molecular Weight (calculated)
110000.0 Da
IEP (calculated)
6.986
GRAVY (calculated)
-0.194
Length
992 amino acids
Sequence
(BLAST)
001: MEFEKRKAAT LASIRSSVTD KSPKGFLDEP ILHLLETINH HPSYFTTSSC SGRISILSQP KPQSTNPSTK KKARGGSWLY ITHDPADPES VLHLLFPPHP
101: PTQITDPLDQ PSELVFRFEP LIIAIECKDV RSAQFLVATA ISAGFRESGI TCCGEGKRVI IAIRCSIRME VPLGDTGKVM VSREYVRFLV DVANEKMVAN
201: RKRTDGFGLA LLSNGFKNPD DANDVDEDDN FEKLAGNDES SINNGDLLPG PHQDLMPLST ISITGESVEK LHLWGHAACT IDKTDRKEVI VFGGFGGFGR
301: HARRNESMLL DPSCGTLKLV AVSESPSPRL GHTASMVGDC MFVIGGRADP LNILNDVWML DISTCEWSSQ RCIGCEVPPR HRHAAASIGS NVYIFGGLNQ
401: DKILSSLHFL DTKNLQWKEI EQRGPWPCAR HSHDMVAYES QLFMFGGYNG EKVLDDLYSF DVQSCSWKLE MVSGKWPQAR FSHSMFVYKH VIGIIGGCPV
501: SRNCHDLVLL DLKHRLWRSV RLDFMNKELL VRSTASVIGD DLIVIGGGAA CYAFGTKFSE PVKINLLQSL TMSGNDVEAS IQVKTEASLS QPCVIQLERK
601: YAKLGKDILK NFGWLDLERK VYSHEKGLYI CFPVTEKLSA LFHEKQLLDK DLEGSEDNHL TSQLTKGLSP KEISSSVALN LLKELGARKF TNVAVEAKKV
701: AKSPLQRMKE AVTSILKQKG LPEELLDELP QKWERLGDIV VLPVTSFKGP AWSSISGEVW SAVAISLSVN RLARQGRVEA NGTRDSTLEI LVGDDGWVDH
801: RENGILYSFN ATKCMFSWGN LSEKLRMGNV ACENEVVVDL FAGIGYFTLP FLVRSKAKLV YACEWNPHAI EALRHNVEAN FVSDRCIILE GDNRINAPKG
901: VADRVCLGLI PTSEGSWVTA IQALRSPEGG ILHVHGNVKD SDVSSWSEHV SKSLGDIARA EGRSWEVTVE HIEKVKWYAP RIRHLVADVR CR
Best Arabidopsis Sequence Match ( AT4G04670.1 )
(BLAST)
001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
Arabidopsis Description
tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.