CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02069	Soybean	cytosol	48.65	84.9
VIT_10s0116g01770.t01	Wine grape	cytosol	62.51	64.49
Bra000803.1-P	Field mustard	cytosol	56.93	62.01
PGSC0003DMT400060067	Potato	cytosol	42.98	61.85
AT4G04670.1	Thale cress	cytosol	57.02	61.61
Solyc05g055610.2.1	Tomato	cytosol	56.93	61.57
CDY21313	Canola	cytosol	56.28	60.99
CDX90875	Canola	cytosol	57.02	60.75
GSMUA_Achr6P29460_001	Banana	cytosol	54.05	54.45
TraesCS2A01G223200.1	Wheat	cytosol	51.53	50.97
TraesCS2D01G229200.1	Wheat	cytosol	51.44	50.87
TraesCS2B01G248800.1	Wheat	cytosol	51.35	50.78
HORVU2Hr1G046680.19	Barley	cytosol	51.26	50.41
KXG36320	Sorghum	cytosol, nucleus, peroxisome	49.77	49.49
Zm00001d021624_P002	Maize	mitochondrion	49.49	49.08
KRH43755	Soybean	cytosol	6.6	21.65
KRG92884	Soybean	nucleus	12.0	19.58
KRG92113	Soybean	cytosol	6.6	19.35
KRH68531	Soybean	nucleus	11.81	19.3
KRH34674	Soybean	cytosol	8.93	19.05
KRG96823	Soybean	cytosol, plastid	11.44	18.95
KRH33805	Soybean	nucleus	10.98	18.7
KRG92046	Soybean	cytosol	8.65	18.67
KRG90521	Soybean	peroxisome	10.88	18.54
KRG92111	Soybean	cytosol	2.33	18.25
KRH68432	Soybean	cytosol, nucleus, plastid	10.42	17.67
KRH56785	Soybean	nucleus	10.14	17.3
KRH03160	Soybean	cytosol	10.05	17.25
KRH63715	Soybean	nucleus	10.33	16.82
KRH54239	Soybean	nucleus	10.23	16.67
KRH63188	Soybean	cytosol	9.3	16.31
KRH54725	Soybean	cytosol	9.3	16.31
KRH11220	Soybean	mitochondrion	10.79	16.16
KRH21038	Soybean	mitochondrion	10.6	16.06
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	10.7	16.04
KRH02216	Soybean	mitochondrion	10.14	15.4
KRH50909	Soybean	nucleus	9.86	14.58

Protein Annotations

EntrezGene:100816336	Gene3D:2.120.10.80	Gene3D:3.30.1960.10	Gene3D:3.40.50.150	MapMan:35.1	EMBL:ACUP02004727
EnsemblPlantsGene:GLYMA_07G260400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	UniProt:I1KNC8
InterPro:IPR015915	InterPro:IPR030382	InterPro:IPR036602	EnsemblPlants:KRH51088	ProteinID:KRH51088	ProteinID:KRH51088.1
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:MeTrfase_TRM5/TYW2	PFAM:PF01344	PFAM:PF02475	PFAM:PF02676
PFAM:PF13418	PFscan:PS51684	PANTHER:PTHR23245	PANTHER:PTHR23245:SF25	MetaCyc:PWY-6342	MetaCyc:PWY-7286
InterPro:SAM-dependent_MTases	SMART:SM00612	SUPFAM:SSF111278	SUPFAM:SSF117281	SUPFAM:SSF53335	UniParc:UPI000295D5F9
SEG:seg	InterPro:tRNA_yW-synthesising	InterPro:tRNA_yW-synthesising-like_sf	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:43574314..43582169

Molecular Weight (calculated)

119459.0 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.262

Length

1075 amino acids

Sequence
(BLAST)

0001: MPLGQDFMRP MTRVQQNHLH LEERFWVGLE KKRMEFEKRK AATLASLSST ESDKSPKGSL DAAIVPLLNT LNQNPSYFTT SSCSGRISIL AQPLSLSDSP
0101: NPKKKARGGT WLFVSHDPAD PDSVLSLLFP SESTPSPFAP SELVFRFEPL IIALECRDLS SAHSLVSLAI SCGFRESGIT NAKKRFIIAI RCSIRMEVPL
0201: GDTRNVMVTP HYVRYLVQVA NDKMEANRKR TQRFFQVLLS NGSVLADNSN HLSGTNEVCD HLELEGESQL ENGNVGTSSG TVGSPGCGLS IGHFEIVGEP
0301: VEKLYRWGHS ACGLGDADHK KVIVFGGFGG MGRHARRNDL LLLDPYSGNL DMVSTVGCAS PSPRLGHTAS LVGNRMFVIG GRTGPDKILS DVWILDTTKN
0401: SWNLLQCGDS GFPPRHRHAA AVMGSNIYVF GGLDNDIIFS SFYVFDTNNL HWKEIPVSGY WPCARHSHAM VASDSQIFMF GGYNGGKALG DLHSFDVQKG
0501: QWTKERTAGR NPHARFSHSI FLYKNYLGVL GGCPVRQHCQ ELALLDLKLR LWKHVTLNSV GKDLFVRSTA NVVGDDLAIV GGGASCYAFG TKFSEPAKVS
0601: LLHLMHSHDE PVKTQRKRTS NQNEGTNRNN IENSCGPQLE HAPNISEDES SHSDDNIPCL NDQSQMIALH YVLQLEKKYA KLGKDILKKF GWLDLGRKAY
0701: SDEGGVHIGF PVHQEFFAVF HERNHNLGDA FDRQNEGLFS KPLKRDKFLL NELSCSEALI LLHEYGAIVL GDKVVEERKA AKSPLKVMTE AITSLIEHKG
0801: LPARLLEELP TRWDQLGDIV LLPSTSFKDS MWDSIAEELW SIVAKSLKAH RLARQGPVAA TGTRDSTLQI LVGDNGWVNH RENGILYSFD ATKCMFSWGN
0901: LSEKIRMARL DCKDEVVVDL FAGIGYFVLP FLVRAQAKLV YACEWNPHAV EALQHNLEAN SVADRCIILE GDNRITAPKS VADRVCLGLI PSSELSWVTA
1001: VRALRREGGI LHVHGNTRDS EESQWIDHVS KSIYDIARSE GYTWEVSIEH VERVKWYAPH IRHVVADVRC RQIQI

Best Arabidopsis Sequence Match ( AT4G04670.1 )
(BLAST)

001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR

Arabidopsis Description

tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.