CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	64.66	72.36
Bra040844.1-P	Field mustard	cytosol	19.08	71.43
CDX75043	Canola	cytosol	64.86	70.83
Solyc11g007320.1.1	Tomato	cytosol	70.88	70.46
GSMUA_Achr8P07640_001	Banana	cytosol	68.67	68.54
Bra005274.1-P	Field mustard	cytosol	51.0	68.1
CDX84132	Canola	cytosol	67.67	68.08
CDX75048	Canola	cytosol, plastid	67.27	67.27
Bra040845.1-P	Field mustard	cytosol, peroxisome, plastid	48.8	66.58
Os03t0835800-02	Rice	cytosol	66.47	66.07
Zm00001d034759_P001	Maize	cytosol	66.06	65.8
CDY67946	Canola	cytosol	46.18	65.53
TraesCS4A01G356300.1	Wheat	mitochondrion	65.86	65.21
TraesCS5B01G515900.1	Wheat	mitochondrion	65.86	65.21
KXG37190	Sorghum	cytosol	65.66	65.14
VIT_13s0074g00620.t01	Wine grape	cytosol	71.89	64.39
AT2G36360.4	Thale cress	cytosol	65.26	62.74
TraesCS5D01G516000.1	Wheat	mitochondrion	64.46	62.7
HORVU5Hr1G117920.1	Barley	cytosol	65.66	62.52
Bra005279.1-P	Field mustard	cytosol	40.96	62.2
Bra005272.1-P	Field mustard	cytosol	56.43	48.78
CDX75045	Canola	cytosol	66.47	39.45
KRH43755	Soybean	cytosol	14.06	21.34
KRG92111	Soybean	cytosol	5.62	20.44
KRG92113	Soybean	cytosol	13.86	18.8
KRH34674	Soybean	cytosol	18.88	18.65
KRH63188	Soybean	cytosol	21.08	17.13
KRG90521	Soybean	peroxisome	21.69	17.12
KRH33805	Soybean	nucleus	21.08	16.64
KRH54725	Soybean	cytosol	20.48	16.64
KRH56785	Soybean	nucleus	20.88	16.51
KRH03160	Soybean	cytosol	20.68	16.45
KRH68432	Soybean	cytosol, nucleus, plastid	20.48	16.09
KRG96823	Soybean	cytosol, plastid	19.28	14.79
KRH68531	Soybean	nucleus	19.48	14.74
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	20.48	14.23
KRG92884	Soybean	nucleus	18.47	13.96
KRH54239	Soybean	nucleus	17.87	13.48
KRH63715	Soybean	nucleus	17.67	13.33
KRH02216	Soybean	mitochondrion	17.87	12.57
KRH50909	Soybean	nucleus	17.47	11.97
KRH21038	Soybean	mitochondrion	16.67	11.69
KRH11220	Soybean	mitochondrion	16.47	11.42
KRH51088	Soybean	cytosol	18.67	8.65
KRH02069	Soybean	cytosol	10.04	8.12

Protein Annotations

EMBL:ACUP02012726	EnsemblPlants:KRG92046	EnsemblPlantsGene:GLYMA_20G187700	EntrezGene:100794091	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244
PANTHER:PTHR23244:SF405	PFAM:PF13415	PFAM:PF13418	ProteinID:KRG92046	ProteinID:KRG92046.1	SEG:seg
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000295924C	UniProt:K7N4D2	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr20:-:42618703..42626896

Molecular Weight (calculated)

55772.3 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.398

Length

498 amino acids

Sequence
(BLAST)

001: MHYWVRASSS DFAGTHPQRR SGHSAVNIGK SKVVVFGGLV DKKFLSDMAV YDIEAKQWFQ PECTGSGSDG HVGPSSRAFH VAVAIDCHMF IFGGRLGSQR
101: LGDFWVLDTD IWQWSELTGF GDLPSPRDFA AASAVGNRKI VMYGGWDGKK WLSDVYVLDT ISLEWMELSV SGTLPHPRCG HTATMVEKRL LVYGGRGGGG
201: PIMGDLWALK GLIEEENEAP GWTQLKLPGQ APSPRCGHTV TSGGHYLLMF GGHGTGGWLS RYDIYYNDCI ILDRVSAQWK RLSIGNEPPP ARAYHSMSII
301: GSRYLLIGGF DGKSTYGDPW WLVPQEDPIA SRLTASPPRN IPESKDVTSL NDDFQPQFKE SQTEKFPFSE LQRRLQISVS ESNSRLHIVN ELEDKELLEL
401: ASRLAGENVS TNSLKAIEAL REHWRKSESN MVKLKELGPL LRDYQRLIYR QYLERSASAQ QPGFGEQVMH QLYHVKNATQ LRMDDIPKLL AEYKQLPI

Best Arabidopsis Sequence Match ( AT2G36360.1 )
(BLAST)

001: MHHWVQASSS DFSGTPPQAR SGHTAVNVGK SMVVVFGGLV DKKFLSDIIV YDIENKLWFE PECTGSESEG QVGPTPRAFH VAITIDCHMF IFGGRSGGKR
101: LGDFWVLDTD IWQWSELTSF GDLPTPRDFA AAAAIGSQKI VLCGGWDGKK WLSDVYVMDT MSLEWLELSV SGSLPPPRCG HTATMVEKRL LVFGGRGGGG
201: PIMGDLWALK GLIDEERETP GWTQLKLPGQ APSSRCGHTV TSGGHYLLLF GGHGTGGWLS RYDVYYNDTI ILDRVTAQWK RLPIGNEPPP PRAYHTMTCI
301: GARHLLIGGF DGKLTFGDLW WLVPEDDPIA KRSSVPQVVN PPEIKESERE LDKERGQDGF SIVDLQQKMG ISVSSGLRLQ IPEESEDQEF VELGTRLIEG
401: DVVDERASMI QMAAQALRQH WKQSTPRTLQ LKELGSLLRD YQRLVTRIFT TQSSLTSADF GLPGTKTFTF YHIKSSSELR INDISKLLEE YKTLVI

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT2G36360]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.