Factsheet for TraesCS5D01G516000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G515900.1	Wheat	mitochondrion	95.31	97.02
TraesCS4A01G356300.1	Wheat	mitochondrion	94.73	96.42
HORVU5Hr1G117920.1	Barley	cytosol	95.31	93.31
Os03t0835800-02	Rice	cytosol	82.23	84.03
KXG37190	Sorghum	cytosol	81.84	83.47
Zm00001d034759_P001	Maize	cytosol	81.25	83.2
GSMUA_Achr8P07640_001	Banana	cytosol	70.7	72.55
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	57.03	65.62
Solyc11g007320.1.1	Tomato	cytosol	63.87	65.27
CDX75043	Canola	cytosol	58.01	65.13
KRG92046	Soybean	cytosol	62.7	64.46
Bra040845.1-P	Field mustard	cytosol, peroxisome, plastid	44.73	62.74
CDX84132	Canola	cytosol	60.35	62.42
CDY67946	Canola	cytosol	42.58	62.11
CDX75048	Canola	cytosol, plastid	59.96	61.65
Bra005274.1-P	Field mustard	cytosol	44.73	61.39
Bra040844.1-P	Field mustard	cytosol	15.43	59.4
AT2G36360.4	Thale cress	cytosol	58.2	57.53
Bra005279.1-P	Field mustard	cytosol	36.52	57.01
VIT_13s0074g00620.t01	Wine grape	cytosol	60.16	55.4
Bra005272.1-P	Field mustard	cytosol	49.02	43.58
CDX75045	Canola	cytosol	58.79	35.88
TraesCS5D01G172400.1	Wheat	mitochondrion	13.09	20.49
TraesCS5D01G106400.1	Wheat	cytosol	19.14	18.63
TraesCS6D01G389800.2	Wheat	cytosol	17.77	17.01
TraesCS3D01G195400.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	19.92	17.0
TraesCS5D01G106700.1	Wheat	mitochondrion	19.73	14.72
TraesCS4D01G147200.1	Wheat	mitochondrion	19.53	14.62
TraesCS5D01G515900.2	Wheat	plastid	18.95	14.5
TraesCS2D01G342300.1	Wheat	nucleus	16.41	13.79
TraesCS2D01G229200.1	Wheat	cytosol	17.77	8.37

Protein Annotations

EnsemblPlants:TraesCS5D01G516000.1	EnsemblPlantsGene:TraesCS5D01G516000	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401	PFAM:PF13415
PFAM:PF13418	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:+:538775195..538782036

Molecular Weight (calculated)

56497.2 Da

IEP (calculated)

6.148

GRAVY (calculated)

-0.313

Length

512 amino acids

Sequence
(BLAST)

001: MMQQLQPTRM HWARAVPSDF GGQAPAPRSG HTAVAIGGSK VVVFGGFADK RFLADIAVYD VENRLWYTPE CSGSGPDGQP GPSPRAFHVA VVIDCNMFIF
101: GGRSGGKRDS ATTKHSQYVS VLLLRSDIWQ WSEMTGFGDL PSPREFAAAS AIGNRKIVMY GGWDGKKWLS DVYVMDTMSL EWTELAVTGS APPPRCGHSA
201: TMIEKRLLIF GGRGGTGPIM GDLWALKGIT EEDNETPGWT QLKLPGQSPS ARCGHSVTSG GPYLLLFGGH GTGGWLSRYD VYYNECVILD RVSVQWKRLP
301: TSNEPPPPRA YHSMTCIGPR FLLFGGFDGK NTFGDLWWLV PEDDPIAKRD LVPSVGSDSN HSTVTGDAQQ SALKESESQS DESPMLELAK RLGIPLYVEP
401: SASFVDEIND KELMELSSRL IGESLPTTDQ LACIQALRDH WRSSPSSSIQ LQELGPLLRD YQRLIIRRFV ESPSPAFLER EDRRLFHLKN ASQLRMDDIP
501: ILLGEYRTLL ST

Best Arabidopsis Sequence Match ( AT2G36360.5 )
(BLAST)

001: MHHWVQASSS DFSGTPPQAR SGHTAVNVGK SMVVVFGGLV DKKFLSDIIV YDIENKLWFE PECTGSESEG QVGPTPRAFH VAITIDCHMF IFGGRSGGKR
101: LGDFWVLDTG TYMLTFAADI WQWSELTSFG DLPTPRDFAA AAAIGSQKIV LCGGWDGKKW LSDVYVMDTM SLEWLELSVS GSLPPPRCGH TATMVEKRLL
201: VFGGRGGGGP IMGDLWALKG LIDEERETPG WTQLKLPGQA PSSRCGHTVT SGGHYLLLFG GHGTGGWLSR YDVYYNDTII LDRVTAQWKR LPIGNEPPPP
301: RAYHTMTCIG ARHLLIGGFD GKLTFGDLWW LVPEDDPIAK RSSVPQVVNP PEIKESEREL DKLRVWSRQE RGQDGFSIVD LQQKMGISVS SGLRLQIPEE
401: SEDQEFVELG TRLIEGDVVD ERASMIQMAA QALRQHWKQS TPRTLQLKEL GSLLRDYQRL VTRIFTTQSS LTSADFGLPG TKTFTFYHIK SSSELRINDI
501: SKLLEEYKTL VI

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT2G36360]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.