Factsheet for VIT_13s0074g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	59.17	73.93
KRG92046	Soybean	cytosol	64.39	71.89
Bra040844.1-P	Field mustard	cytosol	17.09	71.43
CDX75043	Canola	cytosol	57.19	69.74
Solyc11g007320.1.1	Tomato	cytosol	61.87	68.66
CDY67946	Canola	cytosol	42.99	68.09
CDX84132	Canola	cytosol	60.07	67.47
CDX75048	Canola	cytosol, plastid	59.71	66.67
Bra005274.1-P	Field mustard	cytosol	44.42	66.22
GSMUA_Achr8P07640_001	Banana	cytosol	59.17	65.93
Bra040845.1-P	Field mustard	cytosol, peroxisome, plastid	42.81	65.21
Os03t0835800-02	Rice	cytosol	57.91	64.27
KXG37190	Sorghum	cytosol	57.91	64.14
Zm00001d034759_P001	Maize	cytosol	57.55	64.0
Bra005279.1-P	Field mustard	cytosol	37.59	63.72
AT2G36360.4	Thale cress	cytosol	58.99	63.32
TraesCS4A01G356300.1	Wheat	mitochondrion	56.65	62.62
TraesCS5B01G515900.1	Wheat	mitochondrion	56.65	62.62
TraesCS5D01G516000.1	Wheat	mitochondrion	55.4	60.16
HORVU5Hr1G117920.1	Barley	cytosol	56.47	60.04
Bra005272.1-P	Field mustard	cytosol	49.82	48.09
CDX75045	Canola	cytosol	58.81	38.98
VIT_12s0057g01080.t01	Wine grape	cytosol	12.95	22.02
VIT_13s0019g05290.t01	Wine grape	cytosol	16.19	17.72
VIT_14s0060g01090.t01	Wine grape	nucleus	19.24	16.72
VIT_17s0000g05150.t01	Wine grape	cytosol	16.91	15.54
VIT_14s0060g02410.t01	Wine grape	plastid	16.55	13.65
VIT_17s0000g10130.t01	Wine grape	nucleus	16.01	13.05
VIT_05s0020g01740.t01	Wine grape	mitochondrion	15.65	12.13
VIT_10s0116g01770.t01	Wine grape	cytosol	19.06	10.17

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EMBL:AM488421	ProteinID:CAN73233	ProteinID:CAN73233.1	ProteinID:CCB62331
ProteinID:CCB62331.1	UniProt:F6I5W3	EMBL:FN596753	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	GO:GO:0015074	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF13415
PFAM:PF13418	PANTHER:PTHR23244	PANTHER:PTHR23244:SF405	InterPro:RNaseH-like_sf	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF53098	UniParc:UPI000210AB3E	ArrayExpress:VIT_13s0074g00620	EnsemblPlantsGene:VIT_13s0074g00620	EnsemblPlants:VIT_13s0074g00620.t01	SEG:seg

Description

No Description!

Coordinates

chr13:+:8707987..8774854

Molecular Weight (calculated)

61668.5 Da

IEP (calculated)

6.468

GRAVY (calculated)

-0.255

Length

556 amino acids

Sequence
(BLAST)

001: MHYWVRASPS DFSGTLPQLK KNVGHTAVNI GKSKIVVFGG LVDKRFISDL CVYDIENKLW FQPECTGNGS VGQVGPSPRA FHIAIAIDCH MFVFGGRSGG
101: KRLGDFWVLD TDIWQWSELT SFGDLPSPRD FAAASAIGNR KIVMYGGWDG KKWLSDVFVL DTISLEWMEL SVSGSLPPPR CGHTATMVEK RMLVYGGRGG
201: GGPIMGDLWA LKGLLEEENE TPGWTQLKLP GQAPSPRCGH TITSGGHYLL LFGGHGTGGW LSRYDIYYNE CIVLDRVSVQ WKRLPTSNEP PPARAYHSMT
301: CIGSRYLLFG GFDGKSTFDD LWWLVPEEDP IAKRLTSSPA KNIPEDKDLA IAKETQLSHE ASQKEESAVS ELRKRLDISV SISVPELQII DELEDKEFLE
401: LALSLIGVGE KVSSNGQISH TQAAQALRDH WGESTPKLIP LKELGPLLRD YQRLITRHHT ILHQSSCAHT PQQNGVAECK NRHLVETDEQ MKLICDNQAA
501: LHIASNPVFH ERTKHIEVDC HFIREKIASG CVATSFVNSN DQLVATLNGE TPLIFF

Best Arabidopsis Sequence Match ( AT2G36360.1 )
(BLAST)

001: MHHWVQASSS DFSGTPPQAR SGHTAVNVGK SMVVVFGGLV DKKFLSDIIV YDIENKLWFE PECTGSESEG QVGPTPRAFH VAITIDCHMF IFGGRSGGKR
101: LGDFWVLDTD IWQWSELTSF GDLPTPRDFA AAAAIGSQKI VLCGGWDGKK WLSDVYVMDT MSLEWLELSV SGSLPPPRCG HTATMVEKRL LVFGGRGGGG
201: PIMGDLWALK GLIDEERETP GWTQLKLPGQ APSSRCGHTV TSGGHYLLLF GGHGTGGWLS RYDVYYNDTI ILDRVTAQWK RLPIGNEPPP PRAYHTMTCI
301: GARHLLIGGF DGKLTFGDLW WLVPEDDPIA KRSSVPQVVN PPEIKESERE LDKERGQDGF SIVDLQQKMG ISVSSGLRLQ IPEESEDQEF VELGTRLIEG
401: DVVDERASMI QMAAQALRQH WKQSTPRTLQ LKELGSLLRD YQRLVTRIFT TQSSLTSADF GLPGTKTFTF YHIKSSSELR INDISKLLEE YKTLVI

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT2G36360]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.