Factsheet for VIT_12s0057g01080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046550	Potato	cytosol	24.46	70.8
KRH43755	Soybean	cytosol	70.34	70.12
Solyc05g024410.2.1	Tomato	cytosol, extracellular, plastid	68.5	68.71
CDY28023	Canola	cytosol	67.58	67.58
CDY35957	Canola	cytosol	66.97	66.97
AT3G07720.1	Thale cress	cytosol	66.67	66.26
Os09t0249000-01	Rice	cytosol, plasma membrane, plastid	65.14	64.16
KXG34722	Sorghum	cytosol	64.53	62.61
HORVU5Hr1G051310.1	Barley	cytosol, mitochondrion, peroxisome	62.39	62.39
Bra029671.1-P	Field mustard	cytosol	22.94	61.98
TraesCS5D01G172400.1	Wheat	mitochondrion	61.77	61.77
TraesCS5B01G165000.1	Wheat	mitochondrion	61.77	61.77
TraesCS5A01G168200.1	Wheat	mitochondrion	61.16	61.16
CDY05697	Canola	cytosol	53.52	54.35
Zm00001d019221_P001	Maize	cytosol	63.3	54.19
CDY48738	Canola	cytosol	53.21	54.04
CDX85317	Canola	cytosol	52.6	53.42
Bra037506.1-P	Field mustard	cytosol	51.99	52.8
AT5G48180.1	Thale cress	cytosol	52.29	52.45
Bra020713.1-P	Field mustard	cytosol	18.35	50.42
CDX86322	Canola	cytosol	51.99	49.42
CDY30169	Canola	cytosol	45.87	46.44
CDY19142	Canola	cytosol, peroxisome, plastid	49.85	46.44
CDY52048	Canola	plastid	49.54	46.15
CDX96969	Canola	peroxisome	45.87	43.73
AT1G54040.2	Thale cress	cytosol	45.57	43.7
CDY49014	Canola	cytosol	45.57	43.44
CDX94790	Canola	cytosol	45.26	43.15
CDY36630	Canola	cytosol	44.34	42.27
Bra039702.1-P	Field mustard	cytosol	33.95	42.21
CDY51408	Canola	cytosol	44.04	41.98
CDY08215	Canola	cytosol	44.65	41.95
CDY64894	Canola	cytosol, mitochondrion	32.11	40.7
Bra037958.1-P	Field mustard	cytosol	32.72	40.68
CDY30681	Canola	cytosol	42.51	39.94
CDY65743	Canola	cytosol, peroxisome, plastid	48.93	37.83
CDY56199	Canola	cytosol	46.48	36.8
CDY20194	Canola	cytosol	48.62	34.05
CDX92073	Canola	cytosol	48.93	33.9
CDY28366	Canola	cytosol	48.01	33.62
AT3G16390.2	Thale cress	cytosol	47.71	33.4
CDY03963	Canola	cytosol	47.71	33.4
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.79	33.05
AT2G33070.3	Thale cress	cytosol	47.71	32.98
CDY03958	Canola	cytosol	46.79	32.83
AT3G16400.1	Thale cress	cytosol	47.09	32.77
CDY24063	Canola	cytosol, mitochondrion	26.61	30.63
Bra040923.1-P	Field mustard	cytosol	46.79	30.06
Bra018943.1-P	Field mustard	cytosol	17.13	27.86
AT3G16410.1	Thale cress	cytosol	45.87	24.23
Bra022157.1-P	Field mustard	cytosol	7.95	20.63
CDY60589	Canola	cytosol	49.54	20.45
Bra018944.1-P	Field mustard	cytosol	49.24	20.33
Bra021175.1-P	Field mustard	cytosol	14.98	18.92
VIT_13s0019g05290.t01	Wine grape	cytosol	21.71	13.98
VIT_17s0000g05150.t01	Wine grape	cytosol	25.08	13.55
VIT_13s0074g00620.t01	Wine grape	cytosol	22.02	12.95
Bra022159.1-P	Field mustard	cytosol	10.4	12.88
VIT_14s0060g02410.t01	Wine grape	plastid	24.77	12.02
VIT_14s0060g01090.t01	Wine grape	nucleus	23.24	11.88
VIT_05s0020g01740.t01	Wine grape	mitochondrion	23.24	10.6
VIT_17s0000g10130.t01	Wine grape	nucleus	22.02	10.56
VIT_10s0116g01770.t01	Wine grape	cytosol	22.02	6.91

Protein Annotations

EntrezGene:100252786	wikigene:100252786	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CCB51748	ProteinID:CCB51748.1
UniProt:F6HHQ2	EMBL:FN595759	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100252786	wikigene:LOC100252786	PFAM:PF01344	PFAM:PF13418
PFAM:PF13854	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401	SUPFAM:SSF117281	TIGR:TC69046	UniParc:UPI00015CA75B
ArrayExpress:VIT_12s0057g01080	EnsemblPlantsGene:VIT_12s0057g01080	EnsemblPlants:VIT_12s0057g01080.t01	unigene:Vvi.6286	RefSeq:XP_002267128	RefSeq:XP_002267128.1

Description

No Description!

Coordinates

chr12:-:9757637..9759130

Molecular Weight (calculated)

35501.6 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.303

Length

327 amino acids

Sequence
(BLAST)

001: MDQPKGNWIK LDQNGTGPGA RSSHAIAIVG QKAYVFGGEL TPRVPVDNDI HVFDLQDLTW SVATVTGDVP PPRIGVGMAA VGGTIYVFGG RDGTHKELNE
101: LYSFDTFSNK WTLLSSGDAG PPHRSYHSIA ADQRRVYVFG GCGVAGRLND LWAFDVVEKV WIKFPGPGEA CKGRGGLGLA VAEGKIWVVY GFSGEETDDV
201: HCFDLAHEKW AQVDTKGEKP SPRSVFSSLV IGKYIFIYGG EVDPSDQGHL GAGKFSGEVY ALDTHNLVWK KWADTDDNHP GPRGWCAFSA GRLHDKEGLL
301: VYGGNSPSND RLDDIFFLSP CLDVNEK

Best Arabidopsis Sequence Match ( AT3G07720.1 )
(BLAST)

001: MAATPMEGKW VQLKQKGTGP GARSSHAIAL VGNKMYAFGG EFQPRVPVDN QLYVFDLETQ TWSIQEASGD APPPRVGVAM AAVGPIIYFF GGRDSTHQEL
101: NELYCFNTLT NQWKLLSSGE TGPQNRSYHS ITADSQNVYV FGGCGVDGRL NDLWAYNVVD QKWIKFPSPG EACRGRGGPG LEVVQGKIWV VYGFAGEEAD
201: DVHCFDIAKG EWKEVETKGE KPSARSVFST AVVGKQILIS GGEIDPSDLG HMGAGCFTGD AYGLDTETLE WRKWEDGVGS VEHPGPRGWC AFAAGSRDGK
301: QGLLVYGGNS PSNDRLDDIF FFTPNTLLK

Arabidopsis Description

AT3g07720/F17A17_6 [Source:UniProtKB/TrEMBL;Acc:Q9S7W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.