CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g01080.t01	Wine grape	cytosol	70.12	70.34
Solyc05g024410.2.1	Tomato	cytosol, extracellular, plastid	67.38	67.79
CDY28023	Canola	cytosol	67.38	67.58
AT3G07720.1	Thale cress	cytosol	67.68	67.48
CDY35957	Canola	cytosol	66.46	66.67
PGSC0003DMT400046550	Potato	cytosol	22.87	66.37
Os09t0249000-01	Rice	cytosol, plasma membrane, plastid	64.63	63.86
KXG34722	Sorghum	cytosol	64.33	62.61
TraesCS5A01G168200.1	Wheat	mitochondrion	60.37	60.55
HORVU5Hr1G051310.1	Barley	cytosol, mitochondrion, peroxisome	60.37	60.55
TraesCS5D01G172400.1	Wheat	mitochondrion	60.06	60.24
TraesCS5B01G165000.1	Wheat	mitochondrion	59.45	59.63
Bra029671.1-P	Field mustard	cytosol	21.65	58.68
CDY05697	Canola	cytosol	55.49	56.52
CDY48738	Canola	cytosol	55.49	56.52
Bra020713.1-P	Field mustard	cytosol	20.43	56.3
CDX85317	Canola	cytosol	54.88	55.9
Bra037506.1-P	Field mustard	cytosol	54.57	55.59
AT5G48180.1	Thale cress	cytosol	54.27	54.6
Zm00001d019221_P001	Maize	cytosol	60.98	52.36
CDX86322	Canola	cytosol	54.57	52.03
CDY30169	Canola	cytosol	46.34	47.06
CDY19142	Canola	cytosol, peroxisome, plastid	49.7	46.44
CDY52048	Canola	plastid	49.39	46.15
Bra039702.1-P	Field mustard	cytosol	34.76	43.35
AT1G54040.2	Thale cress	cytosol	44.82	43.11
Bra037958.1-P	Field mustard	cytosol	34.15	42.59
CDY49014	Canola	cytosol	44.51	42.57
CDX94790	Canola	cytosol	44.21	42.27
CDY36630	Canola	cytosol	44.21	42.27
CDY51408	Canola	cytosol	44.21	42.27
CDX96969	Canola	peroxisome	43.9	41.98
CDY08215	Canola	cytosol	43.9	41.38
CDY64894	Canola	cytosol, mitochondrion	32.01	40.7
CDY30681	Canola	cytosol	41.77	39.37
CDY56199	Canola	cytosol	46.04	36.56
CDY65743	Canola	cytosol, peroxisome, plastid	46.65	36.17
CDX92073	Canola	cytosol	49.7	34.53
AT2G33070.3	Thale cress	cytosol	49.39	34.25
CDY03963	Canola	cytosol	48.48	34.05
CDY20194	Canola	cytosol	48.48	34.05
AT3G16400.1	Thale cress	cytosol	48.48	33.83
CDY28366	Canola	cytosol	47.87	33.62
CDY03958	Canola	cytosol	47.26	33.26
AT3G16390.2	Thale cress	cytosol	47.26	33.19
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.04	32.61
Bra040923.1-P	Field mustard	cytosol	46.04	29.67
CDY24063	Canola	cytosol, mitochondrion	24.7	28.52
AT3G16410.1	Thale cress	cytosol	47.87	25.36
Bra018943.1-P	Field mustard	cytosol	15.24	24.88
KRG92111	Soybean	cytosol	10.06	24.09
Bra022157.1-P	Field mustard	cytosol	9.15	23.81
CDY60589	Canola	cytosol	47.87	19.82
Bra018944.1-P	Field mustard	cytosol	47.87	19.82
Bra021175.1-P	Field mustard	cytosol	14.94	18.92
KRH34674	Soybean	cytosol	22.87	14.88
KRG92046	Soybean	cytosol	21.34	14.06
KRH54725	Soybean	cytosol	25.61	13.7
Bra022159.1-P	Field mustard	cytosol	10.98	13.64
KRH03160	Soybean	cytosol	25.91	13.58
KRH63188	Soybean	cytosol	25.3	13.54
KRH56785	Soybean	nucleus	25.3	13.17
KRG92113	Soybean	cytosol	13.41	11.99
KRG90521	Soybean	peroxisome	22.87	11.89
KRH68432	Soybean	cytosol, nucleus, plastid	22.87	11.83
KRH33805	Soybean	nucleus	22.56	11.73
KRH63715	Soybean	nucleus	23.48	11.67
KRG96823	Soybean	cytosol, plastid	22.87	11.56
KRH54239	Soybean	nucleus	23.17	11.52
KRG92884	Soybean	nucleus	22.87	11.38
KRH68531	Soybean	nucleus	22.26	11.09
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	22.87	10.46
KRH11220	Soybean	mitochondrion	21.65	9.89
KRH21038	Soybean	mitochondrion	21.34	9.86
KRH02216	Soybean	mitochondrion	21.04	9.75
KRH50909	Soybean	nucleus	21.04	9.49
KRH51088	Soybean	cytosol	21.65	6.6
KRH02069	Soybean	cytosol	11.28	6.01

Protein Annotations

EMBL:ACUP02004893	EnsemblPlants:KRH43755	EnsemblPlantsGene:GLYMA_08G169800	EntrezGene:100808508	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244
PANTHER:PTHR23244:SF401	PFAM:PF01344	PFAM:PF13418	ProteinID:KRH43755	ProteinID:KRH43755.1	SUPFAM:SSF117281
UniParc:UPI000233856C	UniProt:I1KU18	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:13520830..13523164

Molecular Weight (calculated)

35732.0 Da

IEP (calculated)

5.880

GRAVY (calculated)

-0.261

Length

328 amino acids

Sequence
(BLAST)

001: MAVVHGSWVK LDQRGEGQGA RSSHAIAIVA QKVYAFGGEF VPRVPVDNKL HVFDLETLTW SVADASGDAP PPRVGVTMAV VGETIYVFGG RDGEHKELNE
101: LYSFDTRANK WALISSGDIG PPHRSYHSMT ADDQHVYVFG GCGVHGRLND LWAFDVVENK WVEFPSPGEN CKGRGGPGLV VARGKIWVVY GFAGMEMDDV
201: HCFDPAQKTW AQVETSGQKP TARSVFCSFS DGKHIIVYGG EIDPSDQGHM GAGQFSGEVY ALDMETLAWK RLEDKVDFGG HPGPRGWCAF ARAWRGGHEG
301: LLVYGGNSPS NDRLDDIFFL ALSQGLVK

Best Arabidopsis Sequence Match ( AT3G07720.1 )
(BLAST)

001: MAATPMEGKW VQLKQKGTGP GARSSHAIAL VGNKMYAFGG EFQPRVPVDN QLYVFDLETQ TWSIQEASGD APPPRVGVAM AAVGPIIYFF GGRDSTHQEL
101: NELYCFNTLT NQWKLLSSGE TGPQNRSYHS ITADSQNVYV FGGCGVDGRL NDLWAYNVVD QKWIKFPSPG EACRGRGGPG LEVVQGKIWV VYGFAGEEAD
201: DVHCFDIAKG EWKEVETKGE KPSARSVFST AVVGKQILIS GGEIDPSDLG HMGAGCFTGD AYGLDTETLE WRKWEDGVGS VEHPGPRGWC AFAAGSRDGK
301: QGLLVYGGNS PSNDRLDDIF FFTPNTLLK

Arabidopsis Description

AT3g07720/F17A17_6 [Source:UniProtKB/TrEMBL;Acc:Q9S7W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.