CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02216	Soybean	mitochondrion	90.78	93.22
PGSC0003DMT400058372	Potato	mitochondrion	33.7	76.56
KRH11220	Soybean	mitochondrion	74.55	75.49
KRH21038	Soybean	mitochondrion	72.76	74.51
VIT_05s0020g01740.t01	Wine grape	mitochondrion	69.46	70.43
Solyc01g067480.2.1	Tomato	mitochondrion	63.41	70.17
CDY13903	Canola	mitochondrion	60.52	65.28
Bra002170.1-P	Field mustard	mitochondrion	61.07	63.43
CDX92598	Canola	mitochondrion	60.8	63.14
AT5G18590.1	Thale cress	mitochondrion	61.49	63.14
PGSC0003DMT400050298	Potato	cytosol, plastid	32.46	62.77
GSMUA_Achr3P23920_001	Banana	mitochondrion	54.2	55.41
PGSC0003DMT400058369	Potato	mitochondrion	23.52	54.29
GSMUA_Achr5P26950_001	Banana	mitochondrion, nucleus	52.54	53.65
OQU83951	Sorghum	mitochondrion	49.93	52.84
TraesCSU01G068300.1	Wheat	mitochondrion	48.83	52.13
TraesCS4D01G147200.1	Wheat	mitochondrion	48.97	52.05
KXG23613	Sorghum	mitochondrion	49.38	51.88
TraesCS4A01G167800.1	Wheat	mitochondrion	48.56	51.61
Zm00001d048718_P010	Maize	mitochondrion	49.11	51.37
HORVU4Hr1G032550.32	Barley	mitochondrion	48.14	51.09
TraesCS5A01G094400.1	Wheat	mitochondrion	47.87	50.66
TraesCS5D01G106700.1	Wheat	mitochondrion	47.46	50.29
Os12t0538800-01	Rice	mitochondrion, nucleus	48.28	50.29
TraesCS5B01G100500.1	Wheat	mitochondrion	47.32	50.15
HORVU5Hr1G025430.25	Barley	mitochondrion	44.57	46.35
Zm00001d023868_P004	Maize	plasma membrane, plastid, vacuole	46.77	44.44
Os11t0657000-01	Rice	mitochondrion	9.63	43.21
KRG92111	Soybean	cytosol	5.5	29.2
KRH34674	Soybean	cytosol	19.53	28.17
KRG92113	Soybean	cytosol	13.76	27.25
KRH68531	Soybean	nucleus	21.6	23.86
KRG96823	Soybean	cytosol, plastid	20.91	23.42
KRG92884	Soybean	nucleus	19.95	22.0
KRH43755	Soybean	cytosol	9.49	21.04
KRG90521	Soybean	peroxisome	15.27	17.59
KRH33805	Soybean	nucleus	15.27	17.59
KRG92046	Soybean	cytosol	11.97	17.47
KRH68432	Soybean	cytosol, nucleus, plastid	14.99	17.19
KRH63715	Soybean	nucleus	14.17	15.61
KRH54239	Soybean	nucleus	14.03	15.45
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	14.99	15.2
KRH63188	Soybean	cytosol	12.65	15.01
KRH54725	Soybean	cytosol	12.52	14.85
KRH03160	Soybean	cytosol	12.52	14.54
KRH56785	Soybean	nucleus	12.52	14.44
KRH02069	Soybean	cytosol	9.35	11.04
KRH51088	Soybean	cytosol	14.58	9.86

Protein Annotations

EntrezGene:100813671	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02004716	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G250400
GO:GO:0003674	GO:GO:0005215	GO:GO:0005319	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810
GO:GO:0006869	GO:GO:0008150	UniProt:I1KN21	InterPro:IPR015915	EnsemblPlants:KRH50909	ProteinID:KRH50909
ProteinID:KRH50909.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PFAM:PF13418	PANTHER:PTHR23244
PANTHER:PTHR23244:SF308	SUPFAM:SSF117281	UniParc:UPI00023C5FD3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:42840321..42847348

Molecular Weight (calculated)

80535.4 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.493

Length

727 amino acids

Sequence
(BLAST)

001: MFGISRRRMK LGRLKVQLSE ANPGTRTPIR HPKRNGNSNG EGEGDAGGSS GHSDEVDCQP STEITSGSSE NWMVLSIAGD KPTPRSNHAA AVIGNKMIVV
101: GGESGTGLLD DVQVLTFDRF SWTMASSKLY LSPSSLPLKI PACKGHSLVS WGKKALLIGG KTDPGSDRIS VWAFDTETEC WSLMEAKGDI PVARSGHSVV
201: RASSVLILFG GEDAKRRKLN DLHMFDLKSL TWLPLHYTGT APSPRFNHVA ALYDDKILYI FGGSSKSRTL NDLYSLDFET MAWSRVKIRG FHPSPRAGCC
301: DVLCGTKWYI TGGGSRKKRH GETVIFDIVK NEWSVAITSP PSSITTNKGF SMVLVQHKEK DFLVAFGGSK KEPSNQVEVL IMEKNESTLG SQSAHSKCSA
401: SVLLEKHSSS TRLAPQLNDC SQHLVDSVAR QNLASAIEHG SGRRSLSESL VIDPNFPPTN TSLRKQFDHD EEYNTDLKMD KNSDERSFPR AVDHRTNKDY
501: HGKQMNTSEV KTNMEEQQTL LSGILNQQNL VFENDMPESD NLLFSENINI NINSGSLTTS NVYYYYESKL ASLIRKNGIL EGQLAASIAS KEAAEKSLTS
601: VLKSRQEMDR KLTESEKEME LMREKLAGLE LAQEETNNLS NIVHSDNVRL EHDVAFLKAV LDDTQKELHS TRGVIAGERA RAFQLQIVGF CHTLGVVQFE
701: VFHLKQRLQS MEKNRASTTP RKPFHVQ

Best Arabidopsis Sequence Match ( AT5G18590.1 )
(BLAST)

001: MFSFSKRRMR LGRVKKVQLS DSVQGYKSPL RVTKRADSSS NEAAVAATSY SDELDFQPSS GNSENWMVLS VNGEKPAPRF NHAAATIGNK MIVVGGESGS
101: GLLDDVQVLN FDSCTWSTAS SKVYLSPSSL PLMIPAWKGH CLVSWGKKVL LVGGKTDPSS DRVSVWAFDT DSECWSLMDA KGDLPVSRSG HTVVRASSVL
201: ILFGGEDSKK RKLNDLHMFD LKSSTWLPLN CTGTRPCARS HHVATLFDDK ILFVFGGSGK NKTLNDLYSL DFETMVWSRI KIRGFHPSPR AGSCGVLCGT
301: KWYITGGGSR KKRHAETLVF DILKVEWSVA SISSQSSVTS NKGFSLVLLQ HKDKDFLVAF GGTKKDPSNQ VDAFTIDKNK SESPTHPQTT SKKNPGRLLF
401: GKRSSSSAVL TSDESVKASS QRLIDSVARQ KLASAIEEHG GSGRRSLSEI AFGDHRNPPS GNVSLRKQFS TEEEYRAVIE PAKCSEEDIS VPPPTTDDNT
501: GGAKITAEKT LSMVSDREIL SLQKQCSETY PLENVDGALI FQEMDNINFA GSASSSSVYQ FHEAKMTALI RRNGILEGQL EAALAGREAA ERNVSVALRS
601: KQETDKKLSD AMRDVELLKE KLTGLELAQE EANSLSNMVH SDNVRLEHDV AFLKAVLDDT QKELHSTRGV LAGERARAFQ LQVEVFHLKQ RLQSLENRAA
701: TPRKPFHV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WWX4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.