CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03160	Soybean	cytosol	92.54	93.13
KRH54725	Soybean	cytosol	67.3	69.17
KRH63188	Soybean	cytosol	67.14	69.0
VIT_17s0000g05150.t01	Wine grape	cytosol	52.22	54.38
GSMUA_Achr3P30430_001	Banana	cytosol	40.16	53.83
Solyc03g114960.2.1	Tomato	nucleus	42.86	49.82
KRH43755	Soybean	cytosol	13.17	25.3
KRH33805	Soybean	nucleus	22.22	22.19
KRG90521	Soybean	peroxisome	22.22	22.19
KRH68432	Soybean	cytosol, nucleus, plastid	21.75	21.61
KRG92046	Soybean	cytosol	16.51	20.88
KRH34674	Soybean	cytosol	15.4	19.25
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	21.75	19.11
KRG92113	Soybean	cytosol	11.11	19.07
KRG92111	Soybean	cytosol	3.97	18.25
KRG96823	Soybean	cytosol, plastid	17.62	17.1
KRH68531	Soybean	nucleus	17.14	16.41
KRG92884	Soybean	nucleus	16.51	15.78
KRH63715	Soybean	nucleus	15.56	14.85
KRH54239	Soybean	nucleus	15.56	14.85
KRH02216	Soybean	mitochondrion	14.44	12.85
KRH50909	Soybean	nucleus	14.44	12.52
KRH11220	Soybean	mitochondrion	13.97	12.26
KRH21038	Soybean	mitochondrion	13.49	11.97
KRH51088	Soybean	cytosol	17.3	10.14
KRH02069	Soybean	cytosol	9.84	10.06

Protein Annotations

EntrezGene:100820222	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02002797	EnsemblPlantsGene:GLYMA_05G019700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	UniProt:I1JZH1	InterPro:IPR015915	EnsemblPlants:KRH56785
ProteinID:KRH56785	ProteinID:KRH56785.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF13415	PFAM:PF13418
PFAM:PF13854	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401	SMART:SM00612	SUPFAM:SSF50965	UniParc:UPI00029602D0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:1748274..1756484

Molecular Weight (calculated)

68657.3 Da

IEP (calculated)

6.650

GRAVY (calculated)

-0.524

Length

630 amino acids

Sequence
(BLAST)

001: MRWEKVEVKA IGTTTKGGGG PGKRWGHTCN AVKSGRLVYV FGGYGKDNCQ TNQVHVFDTV KQAWSQPALK GSPPTPRDSH TCTAVGDNLF VFGGTDGMNP
101: LKDLHILDTS LQTWVSPTIR GEGPPAREGH SAAVVGKRLY IFGGCGKSAD NNNELYYNDL YILNTETFVW KCATTSGTPP SPRDSHSCSS WKNKIIVIGG
201: EDGHDYYLSD IHILDTDTLI WRELSTSGQL LPPRAGHSTV SFGKNLFVFG GFTDAQNLYN DLYMLDIDTG VWTNVTTATN GPSARFSVAG DCLDPFRSGV
301: LIFIGGCNKS LEALDDMYYL YTGIARESEQ RPEKLSLKKQ LKLKCLEQNP NPSQNQVLVR YGVGSDVGQI MTVLNYSQSS RVNIPVNQSP PPGKKMFEAK
401: VTENISEGYT IETVIDGKPL RGILFLNKPN SLYSGAHTCS RKRTVGEIDS VVSNGIHSNQ LKTPKVVKQN QMENREASRG DCSECHEHRT ESIAVLMSSN
501: PMTANPSDTH KVSANPEPEA AALNRNDEKH ETPKSLIGNL TNDGANDVTS SQGEVQTSDQ TNVLISNFEV PRDNKTSDAP NYNTEFLKPA AAESALHLSN
601: QVSVADSATP QLHNSTTPTT RECSESAKLI

Best Arabidopsis Sequence Match ( AT1G18610.1 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.