CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54239	Soybean	nucleus	96.52	96.52
AT5G50310.1	Thale cress	nucleus	77.88	77.18
PGSC0003DMT400039402	Potato	nucleus	78.64	76.78
CDY34042	Canola	nucleus	77.12	76.77
Solyc03g111390.2.1	Tomato	nucleus	78.33	76.48
VIT_17s0000g10130.t01	Wine grape	nucleus	78.94	76.39
TraesCS2B01G361300.1	Wheat	nucleus	70.91	70.8
KXG26585	Sorghum	nucleus	70.45	70.67
TraesCS2A01G321200.1	Wheat	nucleus	70.61	70.5
Os04t0483600-01	Rice	nucleus	70.61	70.39
TraesCS2D01G342300.1	Wheat	nucleus	62.58	67.82
HORVU2Hr1G083780.14	Barley	nucleus, plastid	66.97	66.27
Zm00001d003259_P006	Maize	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	67.12	62.39
GSMUA_Achr10P...	Banana	nucleus	46.21	61.62
Bra000617.1-P	Field mustard	endoplasmic reticulum	76.82	53.2
CDX83165	Canola	nucleus	77.12	51.31
KRH43755	Soybean	cytosol	11.67	23.48
KRG92111	Soybean	cytosol	3.79	18.25
KRG92113	Soybean	cytosol	10.0	17.98
KRG90521	Soybean	peroxisome	16.97	17.75
KRG92046	Soybean	cytosol	13.33	17.67
KRH33805	Soybean	nucleus	16.82	17.59
KRH34674	Soybean	cytosol	13.33	17.46
KRH68432	Soybean	cytosol, nucleus, plastid	15.91	16.56
KRH68531	Soybean	nucleus	16.21	16.26
KRH54725	Soybean	cytosol	15.0	16.15
KRG92884	Soybean	nucleus	15.76	15.78
KRG96823	Soybean	cytosol, plastid	15.45	15.72
KRH63188	Soybean	cytosol	14.55	15.66
KRH56785	Soybean	nucleus	14.85	15.56
KRH03160	Soybean	cytosol	14.7	15.5
KRH02216	Soybean	mitochondrion	15.61	14.55
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	15.76	14.5
KRH50909	Soybean	nucleus	15.61	14.17
KRH11220	Soybean	mitochondrion	15.0	13.79
KRH21038	Soybean	mitochondrion	14.7	13.66
KRH51088	Soybean	cytosol	16.82	10.33
KRH02069	Soybean	cytosol	9.39	10.06

Protein Annotations

EntrezGene:100818228	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02002708	ncoils:Coil	InterPro:DUF4110
EnsemblPlantsGene:GLYMA_04G192600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JXG3	InterPro:IPR015915
EnsemblPlants:KRH63715	ProteinID:KRH63715	ProteinID:KRH63715.1	InterPro:Kelch-typ_b-propeller	PFAM:PF13415	PFAM:PF13418
PFAM:PF13422	PANTHER:PTHR23244	PANTHER:PTHR23244:SF410	SUPFAM:SSF117281	UniParc:UPI00029638E3	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:46433423..46441695

Molecular Weight (calculated)

75782.6 Da

IEP (calculated)

4.833

GRAVY (calculated)

-0.915

Length

660 amino acids

Sequence
(BLAST)

001: MGKKTKKPGK GKEKTERKTA RAEEKKARRE TKKLSPEDDI DAILLSIQKE EAKKKEVHVD DNVPAPSPRS NCSLTVNPLK ETELILYGGE FYNGNKTFVY
101: GDLYRYDVEK LEWKLVSSPN SPPPRSAHQA VAWKNYVYIF GGEFTSPNQE RFHHYKDFWM LDLKTNQWEQ LNLKGCPSPR SGHRMVLYKH KIILFGGFYD
201: TLREVRYYND LFVFDLDQFK WQEIKPKPGA MWPTARSGFQ LFVYQDDIFL YGGYSKEVSS DKSNSEKGIV HSDMWSLDPK TWEWNKVKKS GMPPGPRAGF
301: SMCVHKRRAL LFGGVVDIEV EGDVMMSLFL NELYGFQLDT NRWYPLELRK EKSTKDKLKK IEQNCPDDVN KINPACTTRE ETEESEDEEN NIDDISKNIA
401: SNMSIDDGET LTKSEGKAEE SSAKLDIQSS LPEVVKPCGR INACMAVGRD TLYIYGGMME IKDQEITLDD LYSLNLSKLD EWKCIIPASE SEWVEASDDD
501: EENEDDDEDE SDGDSLTDED EDDEEEEEEE AQNASVQVGD AVALIKGVGK NLRRKERRVR IEQIRASLGL SDSQRTPSPG ESLKDFYRRT NMYWQMAAHE
601: HTQHTGKELR KDGFDLAEAR YRELKPILDE LALLEAEQKA EEAEGPETSA KKRGKKKTRN

Best Arabidopsis Sequence Match ( AT5G50310.1 )
(BLAST)

001: MGKKTKKPGK GKEKTERKTA KADEKKARRE GKKLSPEDDI DAILLNIQKE EAKKKEVHVE ENVAAPSPRS NCSLTINPLK ETELILYGGE FYNGQKTYVY
101: GDLYRYDVEK QEWKLVSSPN SPPPRSSHQA VAWKNYLYIF GGEFTSPNQE RFHHYKDFWM LDVKTNQWEQ LNLKGCPSPR SGHRMVLYKH KIIIFGGFYD
201: TLREVRYYND LYVFDLDQYK WQEIKPKPGA MWPTARSGFQ FFVYQDEIFL YGGYSKEVSS EKSSEKGIVH ADLWSLDPRT WEWNKVKKIG MPPSSRAGFS
301: VCVHKKRALL FGGVVDMEME GDVMMSLFLN ELYGFQLDNR RWYPIELRKE KSSKDKAKKT LEAKPVASNN DDEMDSTEED ESLAMIEQTD GVGSSDGISE
401: RMATNLTVDG NRSDKSKALQ GAKTRLDPQV SVSEEVVKPC GRINSCMVVG KDTLYIYGGM MEIKDKEVTL DDLYSLNLSK LDEWKCIIPT TETEWVEVSD
501: DEEGDEDDDE DDSEDEGNSE ESDDEDDDEE VEAMDVDGSV KVGVVVAMIK GQGKSLRRKE KRARIEQIRA NLGLSDSQRT PVPGETLKDF YKRTNMYWQM
601: AAYEHTQHTG KELRKDGFDL AETRYLELKP ILDELAILEA EQKAEEAEGP EASSSSRKGG IAKKKR

Arabidopsis Description

AT5g50310/MXI22_1 [Source:UniProtKB/TrEMBL;Acc:Q945N1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.