Factsheet for PGSC0003DMT400039402

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111390.2.1	Tomato	nucleus	97.34	97.34
KRH63715	Soybean	nucleus	76.78	78.64
VIT_17s0000g10130.t01	Wine grape	nucleus	79.14	78.45
KRH54239	Soybean	nucleus	75.3	77.12
AT5G50310.1	Thale cress	nucleus	75.3	76.43
CDY34042	Canola	nucleus	74.7	76.17
KXG26585	Sorghum	nucleus	69.23	71.12
Os04t0483600-01	Rice	nucleus	69.23	70.69
TraesCS2B01G361300.1	Wheat	nucleus	68.79	70.35
TraesCS2A01G321200.1	Wheat	nucleus	68.64	70.2
TraesCS2D01G342300.1	Wheat	nucleus	59.76	66.34
HORVU2Hr1G083780.14	Barley	nucleus, plastid	64.5	65.37
GSMUA_Achr10P...	Banana	nucleus	46.15	63.03
Zm00001d003259_P006	Maize	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	65.68	62.54
Bra000617.1-P	Field mustard	endoplasmic reticulum	74.56	52.89
CDX83165	Canola	nucleus	74.85	51.01
PGSC0003DMT400058372	Potato	mitochondrion	11.09	23.44
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	13.46	20.45
PGSC0003DMT400046550	Potato	cytosol	3.4	20.35
PGSC0003DMT400050298	Potato	cytosol, plastid	10.8	19.41
PGSC0003DMT400070308	Potato	cytosol	10.36	19.18
PGSC0003DMT400007146	Potato	cytosol	15.83	16.36
PGSC0003DMT400063503	Potato	extracellular	7.84	15.82
PGSC0003DMT400060067	Potato	cytosol	13.31	12.05
PGSC0003DMT400058369	Potato	mitochondrion	2.81	6.03

Protein Annotations

EntrezGene:102582206	Gene3D:2.120.10.80	MapMan:35.2	ncoils:Coil	InterPro:DUF4110	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M1B883	PFAM:PF13415
PFAM:PF13418	PFAM:PF13422	PFAM:PF13854	EnsemblPlantsGene:PGSC0003DMG400015238	PGSC:PGSC0003DMG400015238	EnsemblPlants:PGSC0003DMT400039402
PANTHER:PTHR23244	PANTHER:PTHR23244:SF410	SUPFAM:SSF117281	UniParc:UPI000294853C	RefSeq:XP_006351464.1	SEG:seg

Description

Kelch repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015238]

Coordinates

chr3:+:50982104..50991873

Molecular Weight (calculated)

77226.2 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.918

Length

676 amino acids

Sequence
(BLAST)

001: MGKKTKKPGK GKEKTEKKTA KAEEKRARRE SKKLSPEDDI DAILLSIQKE EAKKKEIHIE ENVPAPSPRS NCSLNINPLK ETELVLYGGE FYNGSKTFVY
101: GDLYRYDVEK QEWKLISSPN SPPPRSAHQA VAWKNYLYIF GGEFTSPNQE RFHHYKDFWV LDLKTNQWEQ LNYKGCPSPR SGHRMILYKH KIIVFGGFYD
201: TLREVRYYND LHVFDLDQYK WQEIKPTPGC MWPSARSGFQ FFVYQDEIYL YGGYSKEVSS DKSGSEKGIV HSDMWSLDPK TWEWNKVKKS GMPPGARAGF
301: SMCIHKKRAI LFGGVVDMEM EGDVMMSLFL NELYGFQLDT HRWYPLELRK EKSTKPKQKQ VLDEQADSMD LDSKTSPMEV DAGDEDEDLD SEEDTSTKSN
401: IKKMSLNMKR NVTIDDGNEA SRSEASSKSS AVQHSASADV VKPCGRINSC MAVAKDTLYI YGGMMEIRDQ ELTLDDLYVL NLSKLDEWKC IIPASESEWV
501: EASDNEDDED EDEDDSENEE CESGDDSDEE TDEEDDAEAR NGASTSLETG DAVAIIRGEG KTLRRKEKRA RIEQIRASLG LSDAQRTPVP GESLKDFYKR
601: TNMYWQMAAY EHTQHTGKEL RKDGFDLAEC RFKELKPILD ELAILEAEQK AEEAEGPEKS SAKTRGNKKT KNVASK

Best Arabidopsis Sequence Match ( AT5G50310.1 )
(BLAST)

001: MGKKTKKPGK GKEKTERKTA KADEKKARRE GKKLSPEDDI DAILLNIQKE EAKKKEVHVE ENVAAPSPRS NCSLTINPLK ETELILYGGE FYNGQKTYVY
101: GDLYRYDVEK QEWKLVSSPN SPPPRSSHQA VAWKNYLYIF GGEFTSPNQE RFHHYKDFWM LDVKTNQWEQ LNLKGCPSPR SGHRMVLYKH KIIIFGGFYD
201: TLREVRYYND LYVFDLDQYK WQEIKPKPGA MWPTARSGFQ FFVYQDEIFL YGGYSKEVSS EKSSEKGIVH ADLWSLDPRT WEWNKVKKIG MPPSSRAGFS
301: VCVHKKRALL FGGVVDMEME GDVMMSLFLN ELYGFQLDNR RWYPIELRKE KSSKDKAKKT LEAKPVASNN DDEMDSTEED ESLAMIEQTD GVGSSDGISE
401: RMATNLTVDG NRSDKSKALQ GAKTRLDPQV SVSEEVVKPC GRINSCMVVG KDTLYIYGGM MEIKDKEVTL DDLYSLNLSK LDEWKCIIPT TETEWVEVSD
501: DEEGDEDDDE DDSEDEGNSE ESDDEDDDEE VEAMDVDGSV KVGVVVAMIK GQGKSLRRKE KRARIEQIRA NLGLSDSQRT PVPGETLKDF YKRTNMYWQM
601: AAYEHTQHTG KELRKDGFDL AETRYLELKP ILDELAILEA EQKAEEAEGP EASSSSRKGG IAKKKR

Arabidopsis Description

AT5g50310/MXI22_1 [Source:UniProtKB/TrEMBL;Acc:Q945N1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.