Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g055610.2.1 | Tomato | cytosol | 89.96 | 67.61 |
| KRH02069 | Soybean | cytosol | 44.44 | 53.9 |
| VIT_10s0116g01770.t01 | Wine grape | cytosol | 64.52 | 46.26 |
| KRH51088 | Soybean | cytosol | 61.85 | 42.98 |
| Bra000803.1-P | Field mustard | cytosol | 56.76 | 42.96 |
| AT4G04670.1 | Thale cress | cytosol | 56.76 | 42.61 |
| CDY21313 | Canola | cytosol | 56.09 | 42.24 |
| CDX90875 | Canola | cytosol | 56.89 | 42.12 |
| GSMUA_Achr6P29460_001 | Banana | cytosol | 55.96 | 39.18 |
| KXG36320 | Sorghum | cytosol, nucleus, peroxisome | 52.74 | 36.45 |
| TraesCS2D01G229200.1 | Wheat | cytosol | 53.01 | 36.43 |
| TraesCS2B01G248800.1 | Wheat | cytosol | 52.61 | 36.15 |
| TraesCS2A01G223200.1 | Wheat | cytosol | 52.61 | 36.15 |
| HORVU2Hr1G046680.19 | Barley | cytosol | 51.94 | 35.5 |
| Zm00001d021624_P002 | Maize | mitochondrion | 50.74 | 34.96 |
| PGSC0003DMT400046550 | Potato | cytosol | 2.68 | 17.7 |
| PGSC0003DMT400058372 | Potato | mitochondrion | 7.5 | 17.5 |
| PGSC0003DMT400050172 | Potato | cytosol, mitochondrion, plastid | 10.31 | 17.3 |
| PGSC0003DMT400070308 | Potato | cytosol | 8.43 | 17.26 |
| PGSC0003DMT400050298 | Potato | cytosol, plastid | 7.9 | 15.69 |
| PGSC0003DMT400007146 | Potato | cytosol | 13.12 | 14.98 |
| PGSC0003DMT400039402 | Potato | nucleus | 12.05 | 13.31 |
| PGSC0003DMT400063503 | Potato | extracellular | 5.09 | 11.34 |
| PGSC0003DMT400058369 | Potato | mitochondrion | 4.02 | 9.52 |
Protein Annotations
| Gene3D:2.120.10.80 | Gene3D:3.40.50.150 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR015915 | InterPro:IPR030382 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| UniProt:M1C562 | InterPro:MeTrfase_TRM5/TYW2 | PFAM:PF01344 | PFAM:PF02475 | EnsemblPlantsGene:PGSC0003DMG400023367 | PGSC:PGSC0003DMG400023367 |
| EnsemblPlants:PGSC0003DMT400060067 | PFscan:PS51684 | PANTHER:PTHR23245 | PANTHER:PTHR23245:SF25 | InterPro:SAM-dependent_MTases | SUPFAM:SSF117281 |
| SUPFAM:SSF53335 | UniParc:UPI000296C985 | SEG:seg | : | : | : |
Description
Signal transducer [Source:PGSC_GENE;Acc:PGSC0003DMG400023367]
Coordinates
chr5:-:51261350..51266896
Molecular Weight (calculated)
83216.3 Da
IEP (calculated)
7.121
GRAVY (calculated)
-0.105
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDVDKKKLL IFGGFGGMGR HARRHDLLLL ALECGRMEVL DVLDAPCPRV GHTSSMIGDS MYVIGGRADP SNILNDVWVF NVTKSDWRLL ECSGTPFLPR
101: HRHAAAAVGS KIYVFGGIHS DMIFSSLYVF DTQNIEWSEV QVQGDLPCAR HSHSMAAYGT QIFVFGGYDG QKALGDLHSF DVKTCIWKKE KMIGRPPSAK
201: FSHSMFIYKK YLGIIGGCPV SQHNQRLSLL NLESHWWKHI SISSIGEGLF VRCTANIVDT DLIMIGGGAA CYAFGTKFSE PVKINLLPLI SLIESSVHLH
301: EENMHAICQE EKTMGEMNVS FCSPQNAVEP VTNGSFHQNS EGVDSGTARS QMVASHWVLR LKKKDAKMAK DMLKKFGWLD LGRKAHSQED GKDICFPVTE
401: NFRALFNQRN NLGGLSESVC QSEKDTCMIA LNILIECGAT ILADEIVKVK KASHSPFKVM KEAVGSLLSD RGLPLQLLEE LPSRWERLGD IVVLPLTSFK
501: DSAWDLIGQE LWFIIAKSLG AIRLARQGRV APTGTRDSTL EILVGDNGWV NHRENGILYS FDATKCMFSW GNLSEKLRMG HFDCKDEVIV DLFAGIGYFV
601: LPFLVRAKAK LVYACEWNPH AVEALRHNLE ANLVADRCVL LEGDNRITAP KGVADRVCLG LIPTSEGSWI TAVRALRDEG GILHIHGNVK DSEENVWTKY
701: VSQSIQEIAR SEGHNWDVTV EHVERVKWYA PHIRHLVADV SCKRIQT
101: HRHAAAAVGS KIYVFGGIHS DMIFSSLYVF DTQNIEWSEV QVQGDLPCAR HSHSMAAYGT QIFVFGGYDG QKALGDLHSF DVKTCIWKKE KMIGRPPSAK
201: FSHSMFIYKK YLGIIGGCPV SQHNQRLSLL NLESHWWKHI SISSIGEGLF VRCTANIVDT DLIMIGGGAA CYAFGTKFSE PVKINLLPLI SLIESSVHLH
301: EENMHAICQE EKTMGEMNVS FCSPQNAVEP VTNGSFHQNS EGVDSGTARS QMVASHWVLR LKKKDAKMAK DMLKKFGWLD LGRKAHSQED GKDICFPVTE
401: NFRALFNQRN NLGGLSESVC QSEKDTCMIA LNILIECGAT ILADEIVKVK KASHSPFKVM KEAVGSLLSD RGLPLQLLEE LPSRWERLGD IVVLPLTSFK
501: DSAWDLIGQE LWFIIAKSLG AIRLARQGRV APTGTRDSTL EILVGDNGWV NHRENGILYS FDATKCMFSW GNLSEKLRMG HFDCKDEVIV DLFAGIGYFV
601: LPFLVRAKAK LVYACEWNPH AVEALRHNLE ANLVADRCVL LEGDNRITAP KGVADRVCLG LIPTSEGSWI TAVRALRDEG GILHIHGNVK DSEENVWTKY
701: VSQSIQEIAR SEGHNWDVTV EHVERVKWYA PHIRHLVADV SCKRIQT
001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
Arabidopsis Description
tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.