Factsheet for PGSC0003DMT400063503

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099350.2.1	Tomato	extracellular	96.42	48.28
VIT_14s0060g02410.t01	Wine grape	plastid	76.42	37.98
CDY27769	Canola	cytosol	72.54	36.49
CDY05166	Canola	cytosol, nucleus, plastid	72.54	36.49
Bra039439.1-P	Field mustard	cytosol	72.24	36.28
CDY18777	Canola	cytosol	70.75	35.64
AT3G05420.2	Thale cress	cytosol	71.04	35.58
KRG92884	Soybean	nucleus	69.55	35.36
Bra040219.1-P	Field mustard	cytosol	70.15	35.34
CDY18797	Canola	cytosol	70.15	35.29
CDY40708	Canola	cytosol	69.85	35.14
KRG96823	Soybean	cytosol, plastid	67.76	34.98
KRH68531	Soybean	nucleus	68.36	34.8
CDX74147	Canola	cytosol, nucleus, plastid	68.36	34.38
AT5G27630.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	67.46	33.83
GSMUA_Achr2P02340_001	Banana	cytosol, mitochondrion, nucleus, plastid	67.76	33.68
Bra001147.1-P	Field mustard	cytosol	68.66	33.67
GSMUA_Achr6P20340_001	Banana	plastid	68.36	33.58
Os03t0835600-01	Rice	plastid	62.99	32.21
Zm00001d046434_P003	Maize	plastid	58.51	32.18
CDY25029	Canola	cytosol, nucleus, plastid	63.88	31.94
EER90565	Sorghum	plastid	62.69	31.87
CDY05568	Canola	plastid	62.99	31.63
Bra020582.1-P	Field mustard	cytosol, nucleus, plastid	62.69	31.48
TraesCS5D01G515900.2	Wheat	plastid	61.49	30.79
TraesCS4A01G356400.2	Wheat	plastid	61.49	30.79
TraesCS5B01G515800.1	Wheat	cytosol, peroxisome, plastid	61.19	30.64
Zm00001d034758_P003	Maize	plastid	62.09	30.54
HORVU5Hr1G117970.2	Barley	plastid	60.6	29.17
Zm00001d012892_P002	Maize	plastid	63.28	27.08
HORVU5Hr1G025310.1	Barley	cytosol	34.03	23.7
TraesCS5D01G106400.1	Wheat	cytosol	34.93	22.24
TraesCS5B01G100100.1	Wheat	cytosol	34.93	22.12
PGSC0003DMT400070308	Potato	cytosol	23.88	21.92
TraesCS5A01G094000.1	Wheat	cytosol	34.33	21.82
Os12t0540800-01	Rice	extracellular	33.43	21.25
PGSC0003DMT400058372	Potato	mitochondrion	20.3	21.25
EES16101	Sorghum	cytosol, nucleus, plastid	33.73	20.96
Zm00001d041692_P001	Maize	nucleus	32.84	20.26
PGSC0003DMT400050298	Potato	cytosol, plastid	12.84	11.44
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	13.43	10.11
PGSC0003DMT400007146	Potato	cytosol	15.82	8.1
PGSC0003DMT400039402	Potato	nucleus	15.82	7.84
PGSC0003DMT400060067	Potato	cytosol	11.34	5.09
PGSC0003DMT400058369	Potato	mitochondrion	0.0	0.0
PGSC0003DMT400046550	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.80.10	Gene3D:2.120.10.80	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:FERM/acyl-CoA-bd_prot_sf
GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000582	InterPro:IPR014352
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M1CAR8	PFAM:PF00887	PFAM:PF01344
PFAM:PF13418	EnsemblPlantsGene:PGSC0003DMG400024701	PGSC:PGSC0003DMG400024701	EnsemblPlants:PGSC0003DMT400063503	PRINTS:PR00689	PFscan:PS51228
PANTHER:PTHR23244	PANTHER:PTHR23244:SF336	SUPFAM:SSF117281	SUPFAM:SSF47027	UniParc:UPI0002953051	SEG:seg

Description

Acyl-CoA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024701]

Coordinates

chr1:+:77157617..77165755

Molecular Weight (calculated)

36421.6 Da

IEP (calculated)

4.941

GRAVY (calculated)

-0.406

Length

335 amino acids

Sequence
(BLAST)

001: MAMARVSSGL AYPERFYAAA SYAGFDGSSD SSTKGVSSKF SNDAALLLYA LYQQATVGPC KIPKPRSWSP VEQSKWTSWN GLGNMASTEA MRLFVKILEE
101: EDPGWYSRAS NFVSEPAVQG EKNNETIAET VTENGNVLPE IKTIPAENGI LSEPQDKDVV SEGSGAVGVY DQWVSPPISG PQPKSRYEHG AAVIDDKMYI
201: FGGNHNGRYL SDLQALDLRS WTWSKVEVKT SGEAPVAPIA GHSLIPWGGN KLISIGGHTK DPSETMQVKV FDMQTHTWSN LKTYGKPPLS RGGHSVTPTG
301: TSLVIFGGQD ANRSLLNDLH ILDLETMTWD EMDTL

Best Arabidopsis Sequence Match ( AT3G05420.2 )
(BLAST)

001: MAMPRATSGP AYPERFYAAA SYVGLDGSDS SAKNVISKFP DDTALLLYAL YQQATVGPCN TPKPSAWRPV EQSKWKSWQG LGTMPSIEAM RLFVKILEED
101: DPGWYSRASN DIPDPVVDVQ INQRAKDEPV VENGSTFSET KTISTENGRL AETQDKDVVS EDSNTVSVYN QWTAPQTSGQ RPKARYEHGA AVIQDKMYIY
201: GGNHNGRYLG DLHVLDLKSW TWSRVETKVA TESQETSTPT LLAPCAGHSL IAWDNKLLSI GGHTKDPSES MQVKVFDPHT ITWSMLKTYG KPPVSRGGQS
301: VTMVGKTLVI FGGQDAKRSL LNDLHILDLD TMTWDEIDAV GVSPSPRSDH AAAVHAERFL LIFGGGSHAT CFDDLHVLDL QTMEWSRPAQ QGDAPTPRAG
401: HAGVTIGENW FIVGGGDNKS GASESVVLNM STLAWSVVAS VQGRVPLASE GLSLVVSSYN GEDVLVAFGG YNGRYNNEIN LLKPSHKSTL QTKTLEAPLP
501: GSLSAVNNAT TRDIESEVEV SQEGRVREIV MDNVNPGSKV EGNSERIIAT IKSEKEELEA SLNKERMQTL QLRQELGEAE LRNTDLYKEL QSVRGQLAAE
601: QSRCFKLEVD VAELRQKLQT LETLQKELEL LQRQKAASEQ AAMNAKRQGS GGVWGWLAGS PQEKDDDSP

Arabidopsis Description

ACBP4acyl-CoA binding protein 4 [Source:TAIR;Acc:AT3G05420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.