Factsheet for PGSC0003DMT400070308

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007960.1.1	Tomato	cytosol	94.79	70.33
KRG92111	Soybean	cytosol	20.82	55.47
VIT_13s0019g05290.t01	Wine grape	cytosol	71.78	51.57
KRH34674	Soybean	cytosol	64.93	47.02
CDY11290	Canola	cytosol	63.56	46.12
Bra005805.1-P	Field mustard	cytosol	63.56	46.12
AT5G04420.3	Thale cress	cytosol	64.93	46.11
CDY58438	Canola	cytosol	63.01	45.73
KRG92113	Soybean	cytosol	44.11	43.87
Os02t0822800-01	Rice	cytosol	55.07	38.73
TraesCS6B01G450700.1	Wheat	cytosol	54.79	37.74
HORVU6Hr1G093000.5	Barley	cytosol	55.07	37.64
OQU85983	Sorghum	cytosol	53.7	37.48
TraesCS6D01G389800.2	Wheat	cytosol	54.79	37.38
GSMUA_Achr9P23600_001	Banana	cytosol	57.53	37.37
TraesCS6A01G406400.1	Wheat	cytosol	55.07	34.9
Zm00001d051876_P002	Maize	nucleus	54.25	33.33
PGSC0003DMT400058372	Potato	mitochondrion	27.12	30.94
PGSC0003DMT400050298	Potato	cytosol, plastid	26.85	26.06
PGSC0003DMT400063503	Potato	extracellular	21.92	23.88
PGSC0003DMT400046550	Potato	cytosol	5.75	18.58
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	20.55	16.85
PGSC0003DMT400007146	Potato	cytosol	23.29	13.0
PGSC0003DMT400039402	Potato	nucleus	19.18	10.36
PGSC0003DMT400060067	Potato	cytosol	17.26	8.43
PGSC0003DMT400058369	Potato	mitochondrion	1.37	1.59

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	UniProt:M1CLY9	PFAM:PF01344	PFAM:PF07646
PFAM:PF13415	EnsemblPlantsGene:PGSC0003DMG400027336	PGSC:PGSC0003DMG400027336	EnsemblPlants:PGSC0003DMT400070308	PANTHER:PTHR23244	PANTHER:PTHR23244:SF336
SUPFAM:SSF117281	UniParc:UPI000295C7B3	SEG:seg	:	:	:

Description

Acyl-CoA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027336]

Coordinates

chr11:-:4183271..4190467

Molecular Weight (calculated)

39999.8 Da

IEP (calculated)

7.070

GRAVY (calculated)

-0.102

Length

365 amino acids

Sequence
(BLAST)

001: MGSDGQNWYL GLTYDQWVPL SVSGPTPAAR YKHAAVTVDG KLYIIGGSRN GRYLSDIQVF DLKCLTWSTI KLNSGVLPAT SGHNMILWEN KLLFLAGHSK
101: DVSDTVTVRF IDLQSYECGV IETFGKLPVA RGGQSVTFFG SKLIMFGGED QHRRLLNDIS VLDLETMTWS TVETTQTSPA PRFDHTAALH ADRYLLILGG
201: CSHSIFFNDL HVLDLETMEW SQPQLQGDLV SPRAGHAGVT IGDNWYIVGG GDNKSGVPET LMLNMSKLVV SVLATVKGRD PLASEGLSVS SASLDGENFL
301: VAFGGYNGKY NNEVYVMRPK PRDVLHPKIL QSPAAEAAAA ASVRAAYALT KPEKVRLIRE RRYQF

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.