Factsheet for GSMUA_Achr9P23600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0822800-01	Rice	cytosol	56.23	60.89
OQU85983	Sorghum	cytosol	55.16	59.27
TraesCS6B01G450700.1	Wheat	cytosol	54.45	57.74
PGSC0003DMT400070308	Potato	cytosol	37.37	57.53
HORVU6Hr1G093000.5	Barley	cytosol	54.09	56.93
TraesCS6D01G389800.2	Wheat	cytosol	54.09	56.82
VIT_13s0019g05290.t01	Wine grape	cytosol	50.36	55.71
KRG92113	Soybean	cytosol	35.23	53.95
Solyc11g007960.1.1	Tomato	cytosol	46.62	53.25
TraesCS6A01G406400.1	Wheat	cytosol	54.27	52.95
AT5G04420.3	Thale cress	cytosol	47.15	51.56
Bra005805.1-P	Field mustard	cytosol	46.09	51.49
CDY11290	Canola	cytosol	46.09	51.49
CDY58438	Canola	cytosol	45.91	51.29
Zm00001d051876_P002	Maize	nucleus	54.09	51.18
KRH34674	Soybean	cytosol	45.73	50.99
KRG92111	Soybean	cytosol	9.96	40.88
GSMUA_Achr2P02340_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.53	35.46
GSMUA_Achr6P20340_001	Banana	plastid	39.68	32.7
GSMUA_Achr8P07640_001	Banana	cytosol	17.26	19.44
GSMUA_Achr3P23920_001	Banana	mitochondrion	24.56	19.41
GSMUA_Achr5P26950_001	Banana	mitochondrion, nucleus	24.56	19.38
GSMUA_Achr3P30430_001	Banana	cytosol	15.66	18.72
GSMUA_Achr8P29940_001	Banana	cytosol	17.08	15.24
GSMUA_Achr10P...	Banana	cytosol	5.69	14.1
GSMUA_Achr10P...	Banana	nucleus	9.79	11.11
GSMUA_Achr6P29460_001	Banana	cytosol	16.73	8.81

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
EnsemblPlantsGene:GSMUA_Achr9G23600_001	EnsemblPlants:GSMUA_Achr9P23600_001	EnsemblPlants:GSMUA_Achr9T23600_001	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M0U2W7	PFAM:PF01344	PFAM:PF13418	PANTHER:PTHR23244	PANTHER:PTHR23244:SF336	SUPFAM:SSF117281
UniParc:UPI000295C607	SEG:seg	:	:	:	:

Description

Putative Acyl-CoA-binding domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G23600_001]

Coordinates

chr9:-:28438300..28449922

Molecular Weight (calculated)

62280.5 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.377

Length

562 amino acids

Sequence
(BLAST)

001: MLLPKSGNER RRKKGFVSPF PLIDRSNERA RALLLARPDL QRAKIAMDAT DVSENSDITA FISLASYDQW FSLCPSGWCP PSRYKHATEI VNEKLYVIGG
101: SRNGRYLSDV QVFDFRTLKW STLSLKVDND SSELEKINLE NAFPAVADHS LVKWEKGLLV VAGHTKELSD NVTVWSIDLD TNNCSLVQTN GKIPIARGGQ
201: SATLVGSKLF LFGGEDRKRH LLNDLHILDL TTMTWDEIEI KNTSPAPRFD HTAAVYGDQY LLIFGGSSHS TCFNDLHLLD LLTMEWSQPQ TQGAYVTPRG
301: GHASTIVDEN WYIVGGGDNM SGATETIVLN ISKFVWSMAT SVGNREPLAS EGLTLCSTMI DGEKLLIAFG GYNGKYNNEV FVLKIKPKEP IRPRLLQSPA
401: AAAAAASVTA AYAIIAATDE KNNSSKNIDD SNSKSNHESA QNDTDSLKAE TKILKSRIVE VRDEKSRIQA RIDELNISHT ELLKELQSVQ SQLAAESARC
501: LKLETNIAQI QKSLVSFSSL ENELEVLRHQ KSQMEQETVD AQKQRSGGVW QWLSGTTQNS EQ

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.