Factsheet for GSMUA_Achr8P29940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00630	Sorghum	cytosol	64.92	66.72
Os01t0300900-01	Rice	cytosol	66.03	66.67
TraesCS3D01G195400.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	62.54	65.67
TraesCS3B01G221000.2	Wheat	cytosol, mitochondrion, nucleus, vacuole	62.7	65.29
TraesCS3A01G192200.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	62.54	65.02
Zm00001d040606_P001	Maize	cytosol	62.86	63.87
HORVU3Hr1G040720.1	Barley	mitochondrion, nucleus, peroxisome, vacuole	62.22	63.33
Zm00001d009123_P001	Maize	cytosol	62.7	63.2
VIT_14s0060g01090.t01	Wine grape	nucleus	59.84	58.91
KRH33805	Soybean	nucleus	55.4	55.31
KRG90521	Soybean	peroxisome	55.24	55.15
KRH68432	Soybean	cytosol, nucleus, plastid	52.22	51.89
PGSC0003DMT400007146	Potato	cytosol	49.52	47.71
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	52.7	46.3
Solyc01g100600.2.1	Tomato	cytosol	32.38	40.88
GSMUA_Achr3P30430_001	Banana	cytosol	19.21	25.74
GSMUA_Achr8P07640_001	Banana	cytosol	16.03	20.24
GSMUA_Achr9P23600_001	Banana	cytosol	15.24	17.08
GSMUA_Achr2P02340_001	Banana	cytosol, mitochondrion, nucleus, plastid	18.1	16.91
GSMUA_Achr10P...	Banana	cytosol	6.03	16.74
GSMUA_Achr6P20340_001	Banana	plastid	17.14	15.84
GSMUA_Achr3P23920_001	Banana	mitochondrion	16.98	15.05
GSMUA_Achr5P26950_001	Banana	mitochondrion, nucleus	16.83	14.89
GSMUA_Achr10P...	Banana	nucleus	8.73	11.11
GSMUA_Achr6P29460_001	Banana	cytosol	15.87	9.37

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29940_001	EnsemblPlants:GSMUA_Achr8T29940_001	EnsemblPlantsGene:GSMUA_Achr8G29940_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244	PANTHER:PTHR23244:SF405
PFAM:PF01344	PFAM:PF13415	PFAM:PF13418	SEG:seg	SMART:SM00612	SUPFAM:SSF117281
UniParc:UPI000294920D	UniProt:M0TUU6	MapMan:35.1	:	:	:

Description

Putative Rab9 effector protein with kelch motifs [Source:GMGC_GENE;Acc:GSMUA_Achr8G29940_001]

Coordinates

chr8:+:32154509..32159217

Molecular Weight (calculated)

68723.8 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.407

Length

630 amino acids

Sequence
(BLAST)

001: MGSLGMEVVK GRKAMWLYPR VTGFNPPERW GHSACFFEGV VYIFGGCCGG LHFSDVLTLN LETMAWSSLV TTGQKPGSRD SHSTAIVGHK MIVLGGTNGT
101: KKVNDLHILD LRTKEWSQPN CNGTPPSPRE SHTATIIGDG KLLIFGGSGE GEANYLNDVH ILDLKNMTWT SPEVKGDPPA PRDSHTAIAI GDKLLIYGGD
201: CGDRYHGEVD VLNMETMTWS RLAVKGSSPG VRAGHAAVNI GTKVYVIGGV GDKQYYSDVW VLDVGICSWV QLEIRGQQPQ GRFSHTAVVT NNDIAIYGGC
301: GEDERPLNEF IILQLGSEHP NGRYNISMCK IFGSHWIQEK RKFLRTENLQ TAVVPKNGEQ SRRSSEVEVE PRNSMALEHM TVKRRKTNDA RVSENESEPE
401: EHSLSLSQHS SPSQSDQEQN IVQKLSTSAN DSILPQQFAR VKLYNHREPV KNVQRSTKDT HFLGGESPRQ PKAEQFLRAV PPLRQECVLL GAEPKPQLRP
501: CFSPLIGAEV HGTVDGAFDS GYLMTANVNG QILRGVLFSP GPAVAAPRPA INSQGLTCAT AIFQHSPSPH ATPFHVRPPR QPISGVLPEY GHHLKQTPQV
601: QVVKAQPVKF KGDMQDVVLT LGGPGGGGLS

Best Arabidopsis Sequence Match ( AT1G74150.2 )
(BLAST)

001: MRWERVQQVG LGDSSSFGPG KRWGHTCNAI KGGRFLYVFG GFGRDNCLTN QVHVFDAETQ IWIRPEINGV PPCPRDSHSC TTVGDNLFVF GGTDGTKYLN
101: DVHILDTYSH TWIRPDIRGE GPRVREAHSA ALVDKRLFIF GGCGKSSDSD DEVFYNDLYI LNTETYMWKR AVTSGKPPSA RDSHTCSAWK NKIIVVGGED
201: LDDYYLSDVH ILDTDKFVWK ELKTSGQVLT PRAGHVTVAL ERNLFVFGGF TDSQNLYDDL YVLDLETGVW SKVVAMVEGP SARFSSAAVC LDPYKAGSFF
301: FVGGCNKNLE PLDDIYYLHT EGRYDVRFHQ NPGRSSLRKQ MKLKCQGQEL TVAKTNIDHG RENVPLNIGY IDQRKPMFQA RVTENAPLGY TIETIIDGKV
401: LRGVLFSNRH SSVRIADSSI SSRERPATSD GDCDHRAKIP RTFSKDPAGS SQQAGPTDPS DDTNKKVADS NDTDTPMIDT VDANVNMEGT HEAETAAVTI
501: DAKDQDASQL DKGIVNTDPL PVSHDQVNVI STDAAKADPG VDSSTRKQEE GTSAEEDANV GPQPQQH

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HTV1]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.