Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G195400.1 | Wheat | cytosol, mitochondrion, nucleus, vacuole | 97.36 | 98.33 |
| TraesCS3B01G221000.2 | Wheat | cytosol, mitochondrion, nucleus, vacuole | 96.7 | 96.86 |
| HORVU3Hr1G040720.1 | Barley | mitochondrion, nucleus, peroxisome, vacuole | 91.09 | 89.18 |
| Os01t0300900-01 | Rice | cytosol | 82.01 | 79.65 |
| EES00630 | Sorghum | cytosol | 80.2 | 79.28 |
| Zm00001d040606_P001 | Maize | cytosol | 78.05 | 76.29 |
| Zm00001d009123_P001 | Maize | cytosol | 76.24 | 73.92 |
| GSMUA_Achr8P29940_001 | Banana | cytosol | 65.02 | 62.54 |
| VIT_14s0060g01090.t01 | Wine grape | nucleus | 56.27 | 53.28 |
| KRH33805 | Soybean | nucleus | 53.63 | 51.51 |
| KRG90521 | Soybean | peroxisome | 53.3 | 51.19 |
| KRH68432 | Soybean | cytosol, nucleus, plastid | 50.0 | 47.79 |
| PGSC0003DMT400007146 | Potato | cytosol | 50.0 | 46.33 |
| KRG96716 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 50.49 | 42.68 |
| Solyc01g100600.2.1 | Tomato | cytosol | 31.85 | 38.68 |
| TraesCS5A01G168200.1 | Wheat | mitochondrion | 13.04 | 24.16 |
| TraesCS4A01G356300.1 | Wheat | mitochondrion | 17.33 | 20.87 |
| TraesCS5A01G094000.1 | Wheat | cytosol | 17.33 | 19.92 |
| TraesCS4A01G356400.2 | Wheat | plastid | 18.32 | 16.59 |
| TraesCS6A01G406400.1 | Wheat | cytosol | 15.35 | 16.15 |
| TraesCS2A01G321200.1 | Wheat | nucleus | 16.67 | 15.28 |
| TraesCS5A01G094400.1 | Wheat | mitochondrion | 16.83 | 14.85 |
| TraesCS4A01G167800.1 | Wheat | mitochondrion | 16.5 | 14.62 |
| TraesCS2A01G223200.1 | Wheat | cytosol | 16.34 | 9.11 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G192200.1 | EnsemblPlantsGene:TraesCS3A01G192200 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF401 | PFAM:PF13415 |
| PFAM:PF13418 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3A:+:248546309..248549193
Molecular Weight (calculated)
65807.0 Da
IEP (calculated)
8.416
GRAVY (calculated)
-0.474
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MERRRKAMWL YPKVVGFNPP ERWGHSACFF EGVIYVFGGC CGGLHFSDVL TLNLDTMAWS SLATKGQRPG TRDSHGAALI GHRMLVFGGT NGNKKVNDLH
101: VLDLRTKEWS RPPCKGTPPS PRESHTVTTA AGGDKLVVFG GSGEGEGNYL NDVHVLDLPT MTWTSPRVTG EVVPAPRDSH GAVTVGNRLF VYGGDCGDRY
201: LGEVDVLDMD TMAWSRFSVK GASPGVRAGH AALGIGSKIY VIGGVGDKQY YSDAWILDVV DRSWTQLETC GQQPQGRFSH SAVIMNTDIA IYGGCGEDER
301: PLNELLVLQL GSGHPNGRYN ISMCKILSNH WSQEKRKLLR AQHHKDASPS NRELGHKPGE AEIEQIRNPF LRGLENGHVK RRKTGDAGPN EMELEQEEHS
401: LSLSQHSSPS QSEKDQEQNG AQMISGGLIS SAMQPLVRLN ANGSRRTSGG IKTDQFVRGI APQQRHEMQF LTAEAKQQHR PSGPPLIGAE VHGTVDGAFD
501: SGYLVTAVVS GQLFRGVLFA PGPGVTAPRP VMQHQILNSS AIPPQHQHAF PVHARPLPQA TGFVRPDYSH HARRGFPARL VKSEPERSGS DLHHVVLTLG
601: GPGGGN
101: VLDLRTKEWS RPPCKGTPPS PRESHTVTTA AGGDKLVVFG GSGEGEGNYL NDVHVLDLPT MTWTSPRVTG EVVPAPRDSH GAVTVGNRLF VYGGDCGDRY
201: LGEVDVLDMD TMAWSRFSVK GASPGVRAGH AALGIGSKIY VIGGVGDKQY YSDAWILDVV DRSWTQLETC GQQPQGRFSH SAVIMNTDIA IYGGCGEDER
301: PLNELLVLQL GSGHPNGRYN ISMCKILSNH WSQEKRKLLR AQHHKDASPS NRELGHKPGE AEIEQIRNPF LRGLENGHVK RRKTGDAGPN EMELEQEEHS
401: LSLSQHSSPS QSEKDQEQNG AQMISGGLIS SAMQPLVRLN ANGSRRTSGG IKTDQFVRGI APQQRHEMQF LTAEAKQQHR PSGPPLIGAE VHGTVDGAFD
501: SGYLVTAVVS GQLFRGVLFA PGPGVTAPRP VMQHQILNSS AIPPQHQHAF PVHARPLPQA TGFVRPDYSH HARRGFPARL VKSEPERSGS DLHHVVLTLG
601: GPGGGN
001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
Arabidopsis Description
F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.