Factsheet for TraesCS6A01G406400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G450700.1	Wheat	cytosol	89.93	97.74
TraesCS6D01G389800.2	Wheat	cytosol	90.45	97.38
HORVU6Hr1G093000.5	Barley	cytosol	88.72	95.69
Os02t0822800-01	Rice	cytosol	74.48	82.66
OQU85983	Sorghum	cytosol	75.0	82.6
Zm00001d051876_P002	Maize	nucleus	72.57	70.37
VIT_13s0019g05290.t01	Wine grape	cytosol	48.78	55.31
PGSC0003DMT400070308	Potato	cytosol	34.9	55.07
GSMUA_Achr9P23600_001	Banana	cytosol	52.95	54.27
KRG92113	Soybean	cytosol	34.55	54.22
Solyc11g007960.1.1	Tomato	cytosol	44.97	52.64
Bra005805.1-P	Field mustard	cytosol	44.62	51.09
CDY58438	Canola	cytosol	44.62	51.09
CDY11290	Canola	cytosol	44.62	51.09
KRH34674	Soybean	cytosol	44.62	50.99
AT5G04420.3	Thale cress	cytosol	45.49	50.97
KRG92111	Soybean	cytosol	10.24	43.07
TraesCS5A01G094000.1	Wheat	cytosol	34.2	37.38
TraesCS4A01G356400.2	Wheat	plastid	38.02	32.74
TraesCS5A01G168200.1	Wheat	mitochondrion	12.67	22.32
TraesCS4A01G167800.1	Wheat	mitochondrion	22.92	19.3
TraesCS5A01G094400.1	Wheat	mitochondrion	22.57	18.92
TraesCS4A01G356300.1	Wheat	mitochondrion	15.62	17.89
TraesCS3A01G192200.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	16.15	15.35
TraesCS2A01G321200.1	Wheat	nucleus	15.45	13.46
TraesCS2A01G223200.1	Wheat	cytosol	16.32	8.65

Protein Annotations

Gene3D:1.20.5.340	Gene3D:2.120.10.80	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	PFAM:PF01344
PFAM:PF07646	PFAM:PF13418	PANTHER:PTHR23244	PANTHER:PTHR23244:SF336	SUPFAM:SSF117281	SUPFAM:SSF57997
EnsemblPlantsGene:TraesCS6A01G406400	EnsemblPlants:TraesCS6A01G406400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:+:611709031..611714440

Molecular Weight (calculated)

63143.2 Da

IEP (calculated)

6.168

GRAVY (calculated)

-0.460

Length

576 amino acids

Sequence
(BLAST)

001: MRIAGDWREF TRRTNVADPT SQPSQSAGHR RSFLRSLRPT RDLDWGMGME EEEGAINGGE EGPGLAAAPH DRWVLLRPAQ GSPRPSARYK HAAEVVQDKL
101: YVVGGSRNGR SLSDVQVFDF RTSKWSALLL SPSRDSNQLN LENNAGNQPF PALASHSMVK WRNMLLVVAG NSRASTSNKV SVWFIDLETN SWSAVDTYGK
201: VPMARGGQSV TLVGSRLIMF GGEDNKRRLL SDLHVLDLET MIWEEVKTEK GGPAPRYDHS AAVYAEHYLL IFGGSSHSTC FNDMYLLDLQ TLEWSQPDTQ
301: GAHITPRSGH AGMMIDENWY IVGGGDNASG STDTIVMNAS KFVWSVVTSV SVRDPLACEG LTLCSATVDG EKFLIAFGGY NGKYNNEIFV MKPKPRNFVQ
401: PRLFQSPAAA AAAASVKAAY AVITATDEKT KDIVATDDLD VKRAEPGSSS KQMVAEIDAL NGEKGELESR LAEVRSENSK LKDKLDMVKL SYGELTKELR
501: SVENQLAAEG SRCQKLESQI AAAHKRLESA SSLENELEAL QQQISQAEQT MTTSQRRKSG GVWKWVGGSA EVSDNE

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.