Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58438 | Canola | cytosol | 86.58 | 88.47 |
| CDY11290 | Canola | cytosol | 86.38 | 88.27 |
| Bra005805.1-P | Field mustard | cytosol | 86.38 | 88.27 |
| VIT_13s0019g05290.t01 | Wine grape | cytosol | 64.59 | 65.35 |
| PGSC0003DMT400070308 | Potato | cytosol | 46.11 | 64.93 |
| KRG92111 | Soybean | cytosol | 17.12 | 64.23 |
| Solyc11g007960.1.1 | Tomato | cytosol | 59.14 | 61.79 |
| KRH34674 | Soybean | cytosol | 59.73 | 60.91 |
| KRG92113 | Soybean | cytosol | 42.41 | 59.4 |
| Os02t0822800-01 | Rice | cytosol | 50.0 | 49.52 |
| HORVU6Hr1G093000.5 | Barley | cytosol | 50.97 | 49.06 |
| TraesCS6B01G450700.1 | Wheat | cytosol | 50.58 | 49.06 |
| TraesCS6D01G389800.2 | Wheat | cytosol | 50.39 | 48.41 |
| GSMUA_Achr9P23600_001 | Banana | cytosol | 51.56 | 47.15 |
| OQU85983 | Sorghum | cytosol | 47.47 | 46.65 |
| TraesCS6A01G406400.1 | Wheat | cytosol | 50.97 | 45.49 |
| Zm00001d051876_P002 | Maize | nucleus | 46.69 | 40.4 |
| AT3G05420.2 | Thale cress | cytosol | 43.39 | 33.33 |
| AT5G27630.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 43.0 | 33.08 |
| AT5G48180.1 | Thale cress | cytosol | 14.01 | 22.09 |
| AT3G07720.1 | Thale cress | cytosol | 13.62 | 21.28 |
| AT1G54040.2 | Thale cress | cytosol | 14.01 | 21.11 |
| AT5G18590.1 | Thale cress | mitochondrion | 27.04 | 19.63 |
| AT1G18610.2 | Thale cress | cytosol | 18.48 | 17.09 |
| AT1G74150.1 | Thale cress | cytosol, mitochondrion | 18.87 | 17.05 |
| AT2G36360.4 | Thale cress | cytosol | 16.34 | 16.22 |
| AT3G16400.1 | Thale cress | cytosol | 14.01 | 15.32 |
| AT2G33070.3 | Thale cress | cytosol | 13.81 | 15.01 |
| AT3G16390.2 | Thale cress | cytosol | 13.62 | 14.99 |
| AT3G16410.1 | Thale cress | cytosol | 14.01 | 11.63 |
| AT5G50310.1 | Thale cress | nucleus | 14.98 | 11.56 |
| AT4G04670.1 | Thale cress | cytosol | 15.76 | 8.14 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:830321 | UniProt:A0A178US13 | ProteinID:AED90740.1 | ProteinID:AED90741.1 |
| ProteinID:AED90742.1 | EMBL:AK317314 | ArrayExpress:AT5G04420 | EnsemblPlantsGene:AT5G04420 | RefSeq:AT5G04420 | TAIR:AT5G04420 |
| RefSeq:AT5G04420-TAIR-G | EnsemblPlants:AT5G04420.3 | TAIR:AT5G04420.3 | Unigene:At.70111 | EMBL:BT015916 | EMBL:BT022006 |
| ProteinID:CAB85548.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | InterPro:Gal_Oxase/kelch_b-propeller |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_001031832.1 | RefSeq:NP_001031833.1 | RefSeq:NP_196062.1 |
| ProteinID:OAO95491.1 | PFAM:PF01344 | PFAM:PF13418 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF336 |
| UniProt:Q9LZ83 | SUPFAM:SSF117281 | SUPFAM:SSF50965 | SUPFAM:SSF90257 | UniParc:UPI00000A60AD | SEG:seg |
Description
AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
Coordinates
chr5:-:1246604..1249839
Molecular Weight (calculated)
56662.5 Da
IEP (calculated)
5.912
GRAVY (calculated)
-0.407
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.