Factsheet for TraesCS6D01G389800.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G450700.1	Wheat	cytosol	97.38	98.3
HORVU6Hr1G093000.5	Barley	cytosol	95.51	95.69
TraesCS6A01G406400.1	Wheat	cytosol	97.38	90.45
OQU85983	Sorghum	cytosol	80.19	82.03
Os02t0822800-01	Rice	cytosol	79.44	81.89
Zm00001d051876_P002	Maize	nucleus	77.57	69.87
VIT_13s0019g05290.t01	Wine grape	cytosol	52.15	54.92
PGSC0003DMT400070308	Potato	cytosol	37.38	54.79
GSMUA_Achr9P23600_001	Banana	cytosol	56.82	54.09
KRG92113	Soybean	cytosol	36.82	53.68
Solyc11g007960.1.1	Tomato	cytosol	48.22	52.44
KRH34674	Soybean	cytosol	47.85	50.79
Bra005805.1-P	Field mustard	cytosol	47.48	50.5
CDY58438	Canola	cytosol	47.48	50.5
CDY11290	Canola	cytosol	47.48	50.5
AT5G04420.3	Thale cress	cytosol	48.41	50.39
KRG92111	Soybean	cytosol	11.03	43.07
TraesCS5D01G106400.1	Wheat	cytosol	36.82	37.45
TraesCS5D01G515900.2	Wheat	plastid	40.93	32.74
TraesCS5D01G172400.1	Wheat	mitochondrion	12.9	21.1
TraesCS4D01G147200.1	Wheat	mitochondrion	24.86	19.44
TraesCS5D01G106700.1	Wheat	mitochondrion	24.86	19.39
TraesCS5D01G516000.1	Wheat	mitochondrion	17.01	17.77
TraesCS3D01G195400.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	17.2	15.33
TraesCS2D01G342300.1	Wheat	nucleus	14.77	12.97
TraesCS2D01G229200.1	Wheat	cytosol	17.2	8.46

Protein Annotations

Gene3D:1.20.5.340	Gene3D:2.120.10.80	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	PFAM:PF01344
PFAM:PF07646	PFAM:PF13854	PANTHER:PTHR23244	PANTHER:PTHR23244:SF336	SUPFAM:SSF117281	SUPFAM:SSF57997
EnsemblPlantsGene:TraesCS6D01G389800	EnsemblPlants:TraesCS6D01G389800.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:465068079..465073329

Molecular Weight (calculated)

58576.8 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.413

Length

535 amino acids

Sequence
(BLAST)

001: MGVEEEEGAI NGGEEGPGLA AAPHDRWVLL RPAQGSARPS ARYKHAAEVV QDKLYVVGGS RNGRSLSDVQ QQFWQVFDFR TSKWSALLLS PSRDSNQLNL
101: ENNAGNQPFP ALASHSMVKW RNMLLVVAGN SRASTSNKVS VWFIDLETNS WSAVDTYGKV PMARGGQSVT LVGSRLIMFG GEDNKRRLLS DLHVLDLETM
201: IWEEVKTEKG GPAPRYDHSA AVYAEHYLLI FGGSSHSTCF NDLYLLDLQS LEWSQPDTQG AHITPRSGHA GMMIDENWYI VGGGDNASGS TDTIVMNASK
301: FVWSVVTTVS VRDRLACEGL TLCSTTVDGE KFLIAFGGYN GKYNNEIFVM KPKPRNFVQP RLFQSPAAAA AAASVKAAYA VITATDEKTK DIVATDDLDV
401: KRAEPGSSSK QMVAEIDALN GEKGELESRL AEVRTENSKL KDKLDMVKLS YNELTKELRS VENQLAAEGS RCQKLESQIA AAHKRLESAS SLENELEALQ
501: QQISQAEQTM TTSQRRKSGG VWKWVGGSAE VSDNE

Best Arabidopsis Sequence Match ( AT5G04420.2 )
(BLAST)

001: MEEIRKEIDV GDWHSNLAHD EWTPLPVSGS RASARYKHAA VVVDEKLYIV GGSRNGRYLS DVQVFDLRSL TWSSLKLKTE SSSADNIQED DGSSLREAFP
101: AISDHRMIKW GNKLLLIGGH SKKSSDNMLV RFIDLETHSC GVIDVFGNVP ASRGGHSITL VGSRVLVFGG EDKNRRLLND LHVLHLETMT WDVVETKQTR
201: PVPRFDHTAA THSDRYLLIF GGCSHSIFYS DLHILDLQTM EWSQPHVQGD VVTPRAGHAG ITIDENWYIV GGGDNSTGCL ETLVLNMSKL VWSTSTHVEA
301: RHPLASEGLS VCSASVFGEN ILVAFGGYNG KYNNDIFVMR LKPGESSHPK IFKSPAAAAA AASVTAAYAI AKSDKSDYPP PANPTLNGNG NSLPERDIRN
401: RIDTIKEEKR ALESSIAETQ VENAKLREKI DEVNSSHTEL SQELQSVEGQ LISERSRCFK LEAQIAELQK ALESGQSIEA EVEMLRRQRS ASDEEEDGTV
501: QRQGSAGVWG LFGR

Arabidopsis Description

AT5G04420 protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.