Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025672.1-P | Field mustard | nucleus | 78.06 | 83.95 |
| CDY26745 | Canola | nucleus | 77.7 | 83.56 |
| CDY19228 | Canola | nucleus | 77.7 | 83.56 |
| Bra016550.1-P | Field mustard | mitochondrion | 76.62 | 81.3 |
| CDX96712 | Canola | mitochondrion | 76.26 | 80.92 |
| CDX83831 | Canola | nucleus | 77.16 | 80.34 |
| AT1G74150.1 | Thale cress | cytosol, mitochondrion | 58.27 | 56.94 |
| GSMUA_Achr3P30430_001 | Banana | cytosol | 44.42 | 52.55 |
| VIT_17s0000g05150.t01 | Wine grape | cytosol | 56.83 | 52.23 |
| Solyc03g114960.2.1 | Tomato | nucleus | 46.94 | 48.16 |
| KRH54725 | Soybean | cytosol | 51.26 | 46.49 |
| KRH63188 | Soybean | cytosol | 50.54 | 45.84 |
| AT3G07720.1 | Thale cress | cytosol | 15.83 | 26.75 |
| AT5G48180.1 | Thale cress | cytosol | 12.95 | 22.09 |
| AT1G54040.2 | Thale cress | cytosol | 13.49 | 21.99 |
| AT5G04420.3 | Thale cress | cytosol | 17.09 | 18.48 |
| AT2G36360.4 | Thale cress | cytosol | 15.47 | 16.6 |
| AT2G33070.3 | Thale cress | cytosol | 13.85 | 16.28 |
| AT3G16400.1 | Thale cress | cytosol | 13.67 | 16.17 |
| AT3G16390.2 | Thale cress | cytosol | 13.31 | 15.85 |
| AT3G05420.2 | Thale cress | cytosol | 17.63 | 14.65 |
| AT5G27630.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 17.45 | 14.52 |
| AT5G50310.1 | Thale cress | nucleus | 17.27 | 14.41 |
| AT5G18590.1 | Thale cress | mitochondrion | 15.65 | 12.29 |
| AT3G16410.1 | Thale cress | cytosol | 13.31 | 11.95 |
| AT4G04670.1 | Thale cress | cytosol | 17.63 | 9.85 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:838442 | UniProt:A0A178W5A3 | ProteinID:AAF98413.1 | ProteinID:AEE29734.1 |
| ProteinID:ANM58671.1 | ArrayExpress:AT1G18610 | EnsemblPlantsGene:AT1G18610 | RefSeq:AT1G18610 | TAIR:AT1G18610 | RefSeq:AT1G18610-TAIR-G |
| EnsemblPlants:AT1G18610.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_001321087.1 | RefSeq:NP_173296.3 | ProteinID:OAP13448.1 | PFAM:PF01344 |
| PFAM:PF13418 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF401 | UniProt:Q9FZ82 | SUPFAM:SSF50965 | UniParc:UPI00000A85F2 |
| SEG:seg | : | : | : | : | : |
Description
F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
Coordinates
chr1:+:6405607..6409532
Molecular Weight (calculated)
60861.5 Da
IEP (calculated)
6.324
GRAVY (calculated)
-0.410
Length
556 amino acids
Sequence
(BLAST)
(BLAST)
001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.