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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000803.1-P Field mustard cytosol 82.81 83.49
CDY21313 Canola cytosol 83.12 83.37
CDX90875 Canola cytosol 82.81 81.67
VIT_10s0116g01770.t01 Wine grape cytosol 61.71 58.93
Solyc05g055610.2.1 Tomato cytosol 58.49 58.55
KRH51088 Soybean cytosol 61.61 57.02
PGSC0003DMT400060067 Potato cytosol 42.61 56.76
KRH02069 Soybean cytosol 31.86 51.46
TraesCS2B01G248800.1 Wheat cytosol 54.57 49.95
TraesCS2A01G223200.1 Wheat cytosol 54.37 49.77
GSMUA_Achr6P29460_001 Banana cytosol 53.37 49.77
TraesCS2D01G229200.1 Wheat cytosol 54.27 49.68
HORVU2Hr1G046680.19 Barley cytosol 54.17 49.31
KXG36320 Sorghum cytosol, nucleus, peroxisome 52.66 48.47
Zm00001d021624_P002 Maize mitochondrion 51.56 47.32
AT5G48180.1 Thale cress cytosol 6.33 19.33
AT3G07720.1 Thale cress cytosol 5.93 17.93
AT3G05420.2 Thale cress cytosol 11.96 17.79
AT1G74150.1 Thale cress cytosol, mitochondrion 10.15 17.75
AT1G18610.2 Thale cress cytosol 9.85 17.63
AT5G27630.3 Thale cress cytosol, mitochondrion, nucleus, plastid 11.16 16.62
AT2G36360.4 Thale cress cytosol 8.44 16.22
AT5G04420.3 Thale cress cytosol 8.14 15.76
AT1G54040.2 Thale cress cytosol 5.23 15.25
AT5G50310.1 Thale cress nucleus 9.75 14.56
AT5G18590.1 Thale cress mitochondrion 9.65 13.56
AT2G33070.3 Thale cress cytosol 6.23 13.11
AT3G16390.2 Thale cress cytosol 6.03 12.85
AT3G16400.1 Thale cress cytosol 6.03 12.77
AT3G16410.1 Thale cress cytosol 6.33 10.18
Protein Annotations
Gene3D:2.120.10.80Gene3D:3.30.1960.10Gene3D:3.40.50.150MapMan:35.1EntrezGene:825800ProteinID:AAD48952.1
ProteinID:AEE82410.1ArrayExpress:AT4G04670EnsemblPlantsGene:AT4G04670RefSeq:AT4G04670TAIR:AT4G04670RefSeq:AT4G04670-TAIR-G
EnsemblPlants:AT4G04670.1TAIR:AT4G04670.1EMBL:AY062510Unigene:At.27318EMBL:BT008367ProteinID:CAB80832.1
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0008033
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0009058GO:GO:0009987GO:GO:0016740
GO:GO:0031591GO:GO:0032259GO:GO:0102522InterPro:IPR015915InterPro:IPR030382InterPro:IPR036602
InterPro:Kelch-typ_b-propellerInterPro:Kelch_1InterPro:MeTrfase_TRM5/TYW2RefSeq:NP_567268.2PFAM:PF01344PFAM:PF02475
PFAM:PF02676PFAM:PF13415PFAM:PF13418PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PFscan:PS51684PANTHER:PTHR23245PANTHER:PTHR23245:SF25UniProt:Q8W4K1
InterPro:SAM-dependent_MTasesSUPFAM:SSF111278SUPFAM:SSF117281SUPFAM:SSF53335UniParc:UPI00000A0B85SEG:seg
InterPro:tRNA_yW-synthesisingInterPro:tRNA_yW-synthesising-like_sf::::
Description
tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]
Coordinates
chr4:+:2367434..2372220
Molecular Weight (calculated)
110862.0 Da
IEP (calculated)
6.661
GRAVY (calculated)
-0.281
Length
995 amino acids
Sequence
(BLAST)
001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.