Factsheet for Bra025672.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26745	Canola	nucleus	99.61	99.61
Bra016550.1-P	Field mustard	mitochondrion	85.11	83.97
AT1G18610.2	Thale cress	cytosol	83.95	78.06
Bra008135.1-P	Field mustard	mitochondrion, nucleus	52.03	55.01
GSMUA_Achr3P30430_001	Banana	cytosol	46.23	50.85
VIT_17s0000g05150.t01	Wine grape	cytosol	58.99	50.41
Bra015931.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	61.7	47.83
Solyc03g114960.2.1	Tomato	nucleus	48.16	45.94
KRH54725	Soybean	cytosol	54.35	45.84
KRH63188	Soybean	cytosol	53.19	44.86
Bra040844.1-P	Field mustard	cytosol	6.38	24.81
Bra037958.1-P	Field mustard	cytosol	12.19	23.95
Bra037506.1-P	Field mustard	cytosol	14.7	23.6
Bra039702.1-P	Field mustard	cytosol	11.99	23.57
Bra020713.1-P	Field mustard	cytosol	5.42	23.53
Bra029671.1-P	Field mustard	cytosol	4.84	20.66
Bra005274.1-P	Field mustard	cytosol	13.93	19.3
Bra005805.1-P	Field mustard	cytosol	18.57	19.09
Bra005279.1-P	Field mustard	cytosol	11.03	17.38
Bra040845.1-P	Field mustard	cytosol, peroxisome, plastid	11.8	16.71
Bra040923.1-P	Field mustard	cytosol	14.89	15.13
Bra020582.1-P	Field mustard	cytosol, nucleus, plastid	18.76	14.54
Bra001147.1-P	Field mustard	cytosol	19.15	14.49
Bra039439.1-P	Field mustard	cytosol	18.57	14.39
Bra040219.1-P	Field mustard	cytosol	18.38	14.29
Bra018943.1-P	Field mustard	cytosol	5.22	13.43
Bra005272.1-P	Field mustard	cytosol	14.31	12.85
Bra002170.1-P	Field mustard	mitochondrion	17.02	12.57
Bra022157.1-P	Field mustard	cytosol	2.51	10.32
Bra018944.1-P	Field mustard	cytosol	15.47	10.1
Bra000803.1-P	Field mustard	cytosol	18.96	9.93
Bra000617.1-P	Field mustard	endoplasmic reticulum	17.41	9.44
Bra021175.1-P	Field mustard	cytosol	4.26	8.49
Bra022159.1-P	Field mustard	cytosol	3.48	6.82

Protein Annotations

EnsemblPlants:Bra025672.1	EnsemblPlants:Bra025672.1-P	EnsemblPlantsGene:Bra025672	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244
PANTHER:PTHR23244:SF401	PFAM:PF01344	PFAM:PF13415	PFAM:PF13418	SEG:seg	SUPFAM:SSF50965
UniParc:UPI000253F457	UniProt:M4EA65	MapMan:35.1	:	:	:

Description

AT1G18610 (E=6e-222) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 8761 Blast hits to 4412 proteins in 271 species: Archae - 12; Bacteria - 304; Metazoa - 4209; Fungi - 851; Plants - 1246; Viruses - 11; Other Eukaryotes - 2128 (source: NCBI BLink).

Coordinates

chrA06:+:7171846..7174474

Molecular Weight (calculated)

56117.9 Da

IEP (calculated)

6.114

GRAVY (calculated)

-0.395

Length

517 amino acids

Sequence
(BLAST)

001: MRWERVRQQQ VGLGESSCYG GPGKRWGHTC NAIKGGSFLY VFGGYGKDNC QTNQVHVFDS AKQIWTQPII SGTPPPPRDS HTCTTVGDNL LVFGGTDGTK
101: PLNDLYILDT SSHTWKCQSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS DINDEIYYND LYVLNTETYV WKRAVTIGNP PSARDSHTCS SWKNKIVVIG
201: GEDGHDYYLS DVHILDTDTF MWKELNTSGQ LLTPRAGHVT VSLGRNLYVF GGFTDAQNLY DDLYVLDVET GVWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVFVGGCNK SLEALDDMFY LHTGLGYDAR LDQSVGSMSL KKQLKLKCQE QSHANPLYDN SLVRINMDHQ GRGNFGMNTG QFDQGKMMFH ARVTETFPVG
401: YSIETMIDGK VLRGVLKRPA MSNGDQANTS KVPRTLSNDQ IGATEAKDPP SNGVDGGIGL INHLDVNINT VAAAPQLDMG TVNAAPSSVA QTDEASLESR
501: NAVSIDVEAT KTGPGET

Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.