Factsheet for Bra016550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96712	Canola	mitochondrion	98.66	98.66
CDX83831	Canola	nucleus	94.66	92.88
Bra025672.1-P	Field mustard	nucleus	83.97	85.11
AT1G18610.2	Thale cress	cytosol	81.3	76.62
Bra008135.1-P	Field mustard	mitochondrion, nucleus	50.19	53.78
GSMUA_Achr3P30430_001	Banana	cytosol	44.27	49.36
VIT_17s0000g05150.t01	Wine grape	cytosol	56.87	49.26
Solyc03g114960.2.1	Tomato	nucleus	47.9	46.31
Bra015931.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	57.82	45.43
KRH54725	Soybean	cytosol	53.05	45.35
KRH63188	Soybean	cytosol	52.86	45.19
Bra037506.1-P	Field mustard	cytosol	14.89	24.22
Bra020713.1-P	Field mustard	cytosol	5.34	23.53
Bra040844.1-P	Field mustard	cytosol	5.92	23.31
Bra039702.1-P	Field mustard	cytosol	11.45	22.81
Bra037958.1-P	Field mustard	cytosol	11.45	22.81
Bra029671.1-P	Field mustard	cytosol	4.58	19.83
Bra005805.1-P	Field mustard	cytosol	18.89	19.68
Bra005274.1-P	Field mustard	cytosol	13.55	19.03
Bra005279.1-P	Field mustard	cytosol	11.07	17.68
Bra040845.1-P	Field mustard	cytosol, peroxisome, plastid	11.64	16.71
Bra040923.1-P	Field mustard	cytosol	15.08	15.52
Bra001147.1-P	Field mustard	cytosol	19.27	14.79
Bra020582.1-P	Field mustard	cytosol, nucleus, plastid	18.7	14.69
Bra039439.1-P	Field mustard	cytosol	18.32	14.39
Bra040219.1-P	Field mustard	cytosol	18.13	14.29
Bra018943.1-P	Field mustard	cytosol	5.15	13.43
Bra005272.1-P	Field mustard	cytosol	14.12	12.85
Bra002170.1-P	Field mustard	mitochondrion	16.79	12.57
Bra022157.1-P	Field mustard	cytosol	2.48	10.32
Bra000617.1-P	Field mustard	endoplasmic reticulum	18.51	10.18
Bra018944.1-P	Field mustard	cytosol	15.08	9.97
Bra000803.1-P	Field mustard	cytosol	18.7	9.93
Bra021175.1-P	Field mustard	cytosol	4.01	8.11
Bra022159.1-P	Field mustard	cytosol	3.24	6.44

Protein Annotations

EnsemblPlants:Bra016550.1	EnsemblPlants:Bra016550.1-P	EnsemblPlantsGene:Bra016550	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401
PFAM:PF13415	PFAM:PF13418	SEG:seg	SUPFAM:SSF50965	UniParc:UPI00025470F0	UniProt:M4DJ72
MapMan:35.1	:	:	:	:	:

Description

AT1G18610 (E=3e-222) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 8761 Blast hits to 4412 proteins in 271 species: Archae - 12; Bacteria - 304; Metazoa - 4209; Fungi - 851; Plants - 1246; Viruses - 11; Other Eukaryotes - 2128 (source: NCBI BLink).

Coordinates

chrA08:-:19008956..19011521

Molecular Weight (calculated)

56755.6 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.397

Length

524 amino acids

Sequence
(BLAST)

001: MRWERVRQQV GSSSGPGKRW GHTCNSVKGG NFLYVFGGYG TDNRQTNQVH VFDAAKQIWT QPMISGTPPP PRDSHSCTTV GDNLIVFGGT DGIKSLNDLY
101: ILDTSSHTWK CQSVRGEAPA PREGHSATLV GKRLFVFGGC GKSSDVNDEI YYNDLYVLNT ETYVWKRAAT IGIPPSARDS HTCSSWKNKI VVIGGEDGHD
201: YYLSDVHILD TDTFVWKEVN TSGQLLTPRA GHVTISLGKN LYVFGGFTDA QNLYDDLYVL DLDTCVWSKV LTIGEGPSAR FSSAGACLDP HRSGFLVFVG
301: GCNKNLEALD DMFYLHTGLG YDARLDQNVG SMSLKKQLKL KCQEQSHASS LYDKSLVGIN MDHQGRGSFG LNNGQFDQGK MMFQAKVTER FPVGYSIETM
401: INGKVLRGVL FSTKQSSVLA KRPAMSNGDH DNSLKVPRTL SKEQTDAAES KDSPPVGMEG GGSGLISNPL DVNINTAAVL DMGTVNTAAP SSSVPEKDED
501: SLESRNAVSI DVGATNKTGP GESS

Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.