Factsheet for Solyc03g114960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025672.1-P	Field mustard	nucleus	45.94	48.16
Bra016550.1-P	Field mustard	mitochondrion	46.31	47.9
CDY26745	Canola	nucleus	45.57	47.78
CDY19228	Canola	nucleus	45.57	47.78
CDX96712	Canola	mitochondrion	45.94	47.52
GSMUA_Achr3P30430_001	Banana	cytosol	41.14	47.45
AT1G18610.2	Thale cress	cytosol	48.16	46.94
VIT_17s0000g05150.t01	Wine grape	cytosol	51.66	46.28
CDX83831	Canola	nucleus	45.57	46.25
CDY42440	Canola	mitochondrion	40.04	44.83
Bra008135.1-P	Field mustard	mitochondrion, nucleus	39.85	44.17
CDY49133	Canola	mitochondrion, nucleus	39.85	44.08
KRH03160	Soybean	cytosol	50.18	43.45
AT1G74150.1	Thale cress	cytosol, mitochondrion	45.02	42.88
KRH56785	Soybean	nucleus	49.82	42.86
KRH54725	Soybean	cytosol	47.42	41.92
KRH63188	Soybean	cytosol	47.42	41.92
CDX73059	Canola	cytosol, mitochondrion	41.88	39.0
CDX96521	Canola	mitochondrion	42.62	37.5
Bra015931.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	42.44	34.48
Solyc05g024410.2.1	Tomato	cytosol, extracellular, plastid	15.68	26.07
Solyc11g007320.1.1	Tomato	cytosol	17.9	19.36
Solyc11g007960.1.1	Tomato	cytosol	17.53	19.31
Solyc01g100600.2.1	Tomato	cytosol	14.39	15.63
Solyc01g099350.2.1	Tomato	extracellular	17.53	14.2
Solyc03g111390.2.1	Tomato	nucleus	15.87	12.72
Solyc01g067480.2.1	Tomato	mitochondrion	14.39	11.87
Solyc05g055610.2.1	Tomato	cytosol	17.9	9.76

Protein Annotations

EnsemblPlants:Solyc03g114960.2.1	EnsemblPlantsGene:Solyc03g114960.2	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401
PFAM:PF07646	PFAM:PF13418	PFAM:PF13964	SEG:seg	SMART:SM00612	SUPFAM:SSF117281
UniParc:UPI00027685AE	UniProt:K4BKZ8	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:+:64819008..64826451

Molecular Weight (calculated)

59308.1 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.565

Length

542 amino acids

Sequence
(BLAST)

001: MRWERVSVHG GGGPGKKWGH TCSAVVGGRL LYVFGGFGDD NRHTNKVHVF DNVNRIWSEP VTKGTLPSPR DSHSCTAVGD NLFVFGGTNG TNSLNDLYIL
101: DTSSNTWIAP SLRGDPPNPR EGHSAALIGK RLFIFGGCGN IDGTEIFYDD VYVLNTETLM WKRIMPSGIP PSKRESHSCS SWNNKIIIIG GQDTSSFYQS
201: DVHILDTDTL SWSKLNTKGQ ILPPRAGHTT ISLGRHLFVF GGFADNQSLF DDVYVLDVAS GTWSEVELTG EGPSPRFSVA GDCLDPHVGG TLVLIGGCNN
301: TLQPLEDMYY LQTGIVREDE RDERRIAKLS LRKQLKLKCQ KQQASASPGD NSFERFDNNA NVHHQMPVNY TQPSRHNVYS NEYQTPLRTK TFQAMVTKSF
401: PNGYTVETVI DGKPLRGLVF SSKPRPEQTP CNDPIRNMGN GETDREKQNG DHNSVREATR PSETNVSDFQ QADILGGNSI RNEPPVGGAT AQMESPLTSY
501: APPAHEVRNV SDVVNLGSGM LTDAVDGGTK VSKENSSATN DS

Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.