CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008135.1-P	Field mustard	mitochondrion, nucleus	98.98	99.18
CDY42440	Canola	mitochondrion	93.67	94.83
CDX73059	Canola	cytosol, mitochondrion	74.69	62.89
CDX96521	Canola	mitochondrion	76.73	61.04
AT1G74150.1	Thale cress	cytosol, mitochondrion	69.39	59.75
CDY26745	Canola	nucleus	54.49	51.64
CDY19228	Canola	nucleus	53.47	50.68
CDX96712	Canola	mitochondrion	53.27	49.81
CDX83831	Canola	nucleus	53.88	49.44
GSMUA_Achr3P30430_001	Banana	cytosol	45.92	47.87
VIT_17s0000g05150.t01	Wine grape	cytosol	51.63	41.82
KRH63188	Soybean	cytosol	50.82	40.62
KRH54725	Soybean	cytosol	50.0	39.97
Solyc03g114960.2.1	Tomato	nucleus	44.08	39.85
CDY28023	Canola	cytosol	17.35	25.99
CDY35957	Canola	cytosol	16.94	25.38
CDY64894	Canola	cytosol, mitochondrion	12.24	23.26
CDX94790	Canola	cytosol	16.12	23.03
CDY48738	Canola	cytosol	15.1	22.98
CDY19142	Canola	cytosol, peroxisome, plastid	16.33	22.79
CDY49014	Canola	cytosol	15.92	22.74
CDX96969	Canola	peroxisome	15.92	22.74
CDY08215	Canola	cytosol	16.12	22.7
CDY52048	Canola	plastid	16.12	22.51
CDY05697	Canola	cytosol	14.69	22.36
CDX85317	Canola	cytosol	14.69	22.36
CDY51408	Canola	cytosol	15.51	22.16
CDY30681	Canola	cytosol	15.71	22.13
CDY36630	Canola	cytosol	15.1	21.57
CDX86322	Canola	cytosol	14.9	21.22
CDY30169	Canola	cytosol	13.27	20.12
CDY11290	Canola	cytosol	20.61	20.08
CDY58438	Canola	cytosol	20.2	19.68
CDX75043	Canola	cytosol	17.76	19.08
CDX84132	Canola	cytosol	18.78	18.59
CDY24063	Canola	cytosol, mitochondrion	10.61	18.31
CDY67946	Canola	cytosol	13.06	18.23
CDX75048	Canola	cytosol, plastid	18.37	18.07
CDY56199	Canola	cytosol	14.29	16.95
CDY65743	Canola	cytosol, peroxisome, plastid	14.29	16.55
CDY03963	Canola	cytosol	15.1	15.85
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	14.9	15.77
CDY03958	Canola	cytosol	14.9	15.67
CDX92073	Canola	cytosol	14.69	15.25
CDY20194	Canola	cytosol	14.49	15.2
CDY28366	Canola	cytosol	14.29	14.99
CDY18777	Canola	cytosol	18.98	13.98
CDY25029	Canola	cytosol, nucleus, plastid	18.98	13.88
CDY18797	Canola	cytosol	18.78	13.81
CDX74147	Canola	cytosol, nucleus, plastid	18.57	13.66
CDY05568	Canola	plastid	18.57	13.64
CDY34042	Canola	nucleus	18.37	13.57
CDY40708	Canola	cytosol	18.37	13.51
CDY27769	Canola	cytosol	18.37	13.51
CDY05166	Canola	cytosol, nucleus, plastid	18.37	13.51
CDY13903	Canola	mitochondrion	18.37	13.35
CDX92598	Canola	mitochondrion	18.16	12.71
CDY43093	Canola	cytosol	2.04	12.35
CDX75045	Canola	cytosol	17.76	10.37
CDY21313	Canola	cytosol	18.57	9.17
CDX90875	Canola	cytosol	18.78	9.12
CDX83165	Canola	nucleus	18.37	9.07
CDY60589	Canola	cytosol	14.49	8.96
CDY65828	Canola	cytosol	1.22	1.85
CDY43091	Canola	cytosol	0.2	0.88
CDY72137	Canola	cytosol	0.2	0.65

Protein Annotations

EnsemblPlants:CDY49133	EnsemblPlantsGene:GSBRNA2T00092367001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401
PFAM:PF07646	PFAM:PF13418	PFAM:PF13854	ProteinID:CDY49133	ProteinID:CDY49133.1	SEG:seg
SUPFAM:SSF50965	UniParc:UPI0004EDACCC	UniProt:A0A078IJ75	MapMan:35.1	:	:

Description

BnaA02g16730DBnaA02g16730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ75]

Coordinates

chrLK032811:-:94637..96855

Molecular Weight (calculated)

54502.7 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.558

Length

490 amino acids

Sequence
(BLAST)

001: MRWERVQRQA GLADSSSGPG KRWGHTCNAV KGGRFVYVFG GFGRDGYFTS QVHVFDAGEQ IWSEPMMRGV PPSPRDSHSC TTVGDNLFVY GGTDGKYYLN
101: DLHVLDTSSH TWKCLNVRGE EPDAREAHSA TLVGKHIFVF GGRGKVPGLD DEVYFNDLYI LNTETITWQR AVTTGTRPFA RDGHTCSTWN NKIIVVGGEH
201: FEGEYLSDVH ILDTDTFAWK QMKTSWQQLT PRAGHITVAI ERNLFVFGGF RDPQSLYNDL YVLDVETGVW SKIVAMEDRP PARFSAAAVC LGPYKAGSFF
301: FFGGCNKNLK PLDDIYYFHT DGVVEARSAQ TRGRLPLRKL KCKEQQKEAV EQGKTVFQAR VTENSPLGYY TIETIIDGKV LRGVLLSNRH HSSVQTADPS
401: STSRQVCWLK RSGMLDADCD HRAKTQRTLS KDTAGSSQQA GPVDPSDDAY KKANVEPLRN EMSTDVGAGG DSSPQKQDEE RVAAEDAEPK

Best Arabidopsis Sequence Match ( AT1G18610.1 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.