CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96712	Canola	mitochondrion	93.45	95.23
Bra016550.1-P	Field mustard	mitochondrion	92.88	94.66
CDY26745	Canola	nucleus	82.77	85.49
CDY19228	Canola	nucleus	82.4	85.11
AT1G18610.2	Thale cress	cytosol	80.34	77.16
CDY42440	Canola	mitochondrion	50.56	55.79
CDY49133	Canola	mitochondrion, nucleus	49.44	53.88
CDX73059	Canola	cytosol, mitochondrion	56.18	51.55
CDX96521	Canola	mitochondrion	57.87	50.16
VIT_17s0000g05150.t01	Wine grape	cytosol	56.55	49.92
GSMUA_Achr3P30430_001	Banana	cytosol	43.45	49.36
KRH63188	Soybean	cytosol	52.81	46.0
KRH54725	Soybean	cytosol	52.62	45.84
Solyc03g114960.2.1	Tomato	nucleus	46.25	45.57
CDY28023	Canola	cytosol	16.48	26.91
CDY35957	Canola	cytosol	16.1	26.3
CDY48738	Canola	cytosol	14.61	24.22
CDY08215	Canola	cytosol	15.54	23.85
CDY05697	Canola	cytosol	14.23	23.6
CDY30681	Canola	cytosol	15.36	23.56
CDX96969	Canola	peroxisome	14.98	23.32
CDY49014	Canola	cytosol	14.79	23.03
CDX94790	Canola	cytosol	14.79	23.03
CDX85317	Canola	cytosol	13.67	22.67
CDY19142	Canola	cytosol, peroxisome, plastid	14.79	22.51
CDY36630	Canola	cytosol	14.42	22.45
CDY51408	Canola	cytosol	14.42	22.45
CDY52048	Canola	plastid	14.61	22.22
CDY64894	Canola	cytosol, mitochondrion	10.67	22.09
CDX86322	Canola	cytosol	13.86	21.51
CDY30169	Canola	cytosol	12.55	20.74
CDX75043	Canola	cytosol	17.04	19.96
CDY43093	Canola	cytosol	3.0	19.75
CDY58438	Canola	cytosol	17.98	19.09
CDY11290	Canola	cytosol	17.98	19.09
CDX84132	Canola	cytosol	17.42	18.79
CDY67946	Canola	cytosol	12.17	18.52
CDX75048	Canola	cytosol, plastid	17.04	18.27
CDY24063	Canola	cytosol, mitochondrion	9.55	17.96
CDY56199	Canola	cytosol	13.48	17.43
CDY65743	Canola	cytosol, peroxisome, plastid	13.48	17.02
CDY03963	Canola	cytosol	14.61	16.7
CDY03958	Canola	cytosol	14.42	16.52
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	14.23	16.41
CDX92073	Canola	cytosol	14.42	16.31
CDY20194	Canola	cytosol	14.04	16.06
CDY28366	Canola	cytosol	13.86	15.85
CDY34042	Canola	nucleus	18.73	15.08
CDX74147	Canola	cytosol, nucleus, plastid	18.73	15.02
CDY18777	Canola	cytosol	18.16	14.59
CDY40708	Canola	cytosol	18.16	14.56
CDY18797	Canola	cytosol	17.98	14.41
CDY25029	Canola	cytosol, nucleus, plastid	17.98	14.33
CDY27769	Canola	cytosol	17.79	14.26
CDY05166	Canola	cytosol, nucleus, plastid	17.79	14.26
CDY05568	Canola	plastid	17.6	14.09
CDY13903	Canola	mitochondrion	16.67	13.2
CDX92598	Canola	mitochondrion	16.85	12.86
CDX75045	Canola	cytosol	17.23	10.97
CDY21313	Canola	cytosol	18.91	10.18
CDX83165	Canola	nucleus	18.54	9.98
CDX90875	Canola	cytosol	18.73	9.91
CDY60589	Canola	cytosol	14.42	9.72
CDY65828	Canola	cytosol	1.12	1.85
CDY43091	Canola	cytosol	0.19	0.88
CDY72137	Canola	cytosol	0.19	0.65

Protein Annotations

EnsemblPlants:CDX83831	EnsemblPlantsGene:GSBRNA2T00139588001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401	PFAM:PF13415	PFAM:PF13418
ProteinID:CDX83831	ProteinID:CDX83831.1	SEG:seg	SUPFAM:SSF117281	UniParc:UPI0004EDAD4E	MapMan:35.1

Description

BnaC08g18140D

Coordinates

chrLK031834:-:682064..685136

Molecular Weight (calculated)

57982.0 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.408

Length

534 amino acids

Sequence
(BLAST)

001: MRWERVRQQV GSSSGPGKRW GHTCNAVKGG TFLYVFGGYG TDNRQTNQVH VFDAAKQIWT QPMISGTPPP PRDSHSCTTV CDNLVVFGGT DGIKSLNDLY
101: ILDTSSHTWK CQSVRGEAPA PREGHTATLV GKRLFVFGGC GKSSDVNDEI YYNDLYVLNT ETYVWKRATT IGNPPSARDS HTCSSWKNKI VVIGGEDGHD
201: YYLSDVHILD TDTFVWKELN TSGQLLTPRA GHVTVSLGKN LYVFGGFTDA QNLYDDLYVL DLDTCVWSKV LTIGEGPSAR FSSTGACLDP HRSGFLVFVG
301: GCNKNLEALD DMFYLHTGLG YDARLDQNVG SMSLKKQLKL KCQEQSHASS LYDKSLVGIS MDHQGVGSFG LKNGQFDQGK MMFQAKVTQR FPVGYSIETM
401: INGKVLRGVL FSTKQSSVLA TDQSLSRRRP AMSNGDQDHS LKVPRTLSKD QTDATESKDS PSMGMEGGGI GLISNPLDVN INTEAVTPQL DMGNVSTAPP
501: SSSVPETDEA SLESRNAVSI DVGATNKTGP GESS

Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.