CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51408	Canola	cytosol	70.16	52.77
CDY08215	Canola	cytosol	70.54	52.3
CDY36630	Canola	cytosol	68.6	51.6
AT1G54040.2	Thale cress	cytosol	67.83	51.32
CDX96969	Canola	peroxisome	67.83	51.02
CDY43093	Canola	cytosol	15.89	50.62
CDY30681	Canola	cytosol	68.22	50.57
CDX94790	Canola	cytosol	66.28	49.85
CDY49014	Canola	cytosol	65.12	48.98
PGSC0003DMT400046550	Potato	cytosol	17.83	40.71
CDY30169	Canola	cytosol	49.22	39.32
CDY19142	Canola	cytosol, peroxisome, plastid	53.49	39.32
CDY52048	Canola	plastid	53.1	39.03
CDY35957	Canola	cytosol	43.8	34.56
CDY28023	Canola	cytosol	43.8	34.56
CDY24063	Canola	cytosol, mitochondrion	36.82	33.45
CDY05697	Canola	cytosol	41.09	32.92
CDY48738	Canola	cytosol	40.7	32.61
CDY56199	Canola	cytosol	51.55	32.2
VIT_12s0057g01080.t01	Wine grape	cytosol	40.7	32.11
KRH43755	Soybean	cytosol	40.7	32.01
CDX85317	Canola	cytosol	39.92	31.99
Os09t0249000-01	Rice	cytosol, plasma membrane, plastid	40.7	31.63
Solyc05g024410.2.1	Tomato	cytosol, extracellular, plastid	38.37	30.37
CDY20194	Canola	cytosol	54.26	29.98
KXG34722	Sorghum	cytosol	39.15	29.97
HORVU5Hr1G051310.1	Barley	cytosol, mitochondrion, peroxisome	37.98	29.97
TraesCS5D01G172400.1	Wheat	mitochondrion	37.98	29.97
TraesCS5A01G168200.1	Wheat	mitochondrion	37.98	29.97
CDX86322	Canola	cytosol	39.92	29.94
CDY03963	Canola	cytosol	53.88	29.76
CDY28366	Canola	cytosol	53.88	29.76
TraesCS5B01G165000.1	Wheat	mitochondrion	37.21	29.36
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.33	29.16
CDY65743	Canola	cytosol, peroxisome, plastid	47.67	29.08
CDY03958	Canola	cytosol	52.33	28.97
CDX92073	Canola	cytosol	52.71	28.81
Zm00001d019221_P001	Maize	cytosol	38.76	26.18
CDY60589	Canola	cytosol	50.78	16.54
CDY67946	Canola	cytosol	18.99	13.96
CDY49133	Canola	mitochondrion, nucleus	23.26	12.24
CDY19228	Canola	nucleus	24.03	11.99
CDY42440	Canola	mitochondrion	22.48	11.98
CDY26745	Canola	nucleus	23.64	11.8
CDX96712	Canola	mitochondrion	22.09	10.88
CDX83831	Canola	nucleus	22.09	10.67
CDX75043	Canola	cytosol	18.6	10.53
CDX84132	Canola	cytosol	18.99	9.9
CDX75048	Canola	cytosol, plastid	18.6	9.64
CDY58438	Canola	cytosol	18.22	9.34
CDX73059	Canola	cytosol, mitochondrion	20.93	9.28
CDY11290	Canola	cytosol	17.83	9.15
CDX96521	Canola	mitochondrion	21.71	9.09
CDY34042	Canola	nucleus	20.93	8.14
CDX74147	Canola	cytosol, nucleus, plastid	19.77	7.66
CDY18797	Canola	cytosol	19.77	7.66
CDY18777	Canola	cytosol	19.38	7.52
CDY27769	Canola	cytosol	18.99	7.36
CDY05166	Canola	cytosol, nucleus, plastid	18.99	7.36
CDY40708	Canola	cytosol	18.6	7.21
CDY05568	Canola	plastid	18.6	7.2
CDY25029	Canola	cytosol, nucleus, plastid	18.6	7.16
CDY13903	Canola	mitochondrion	18.22	6.97
CDX92598	Canola	mitochondrion	18.22	6.71
CDX75045	Canola	cytosol	18.6	5.72
CDX83165	Canola	nucleus	20.54	5.34
CDY21313	Canola	cytosol	18.22	4.74
CDX90875	Canola	cytosol	17.83	4.56
CDY65828	Canola	cytosol	2.33	1.85
CDY43091	Canola	cytosol	0.39	0.88
CDY72137	Canola	cytosol	0.39	0.65

Protein Annotations

EnsemblPlants:CDY64894	EnsemblPlantsGene:GSBRNA2T00043827001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244	PANTHER:PTHR23244:SF351	PFAM:PF13415
ProteinID:CDY64894	ProteinID:CDY64894.1	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0004EBD02B	UniProt:A0A078JDZ4
MapMan:35.1	:	:	:	:	:

Description

BnaCnng45500DBnaCnng45500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDZ4]

Coordinates

chrLK034595:-:26149..26983

Molecular Weight (calculated)

28398.1 Da

IEP (calculated)

9.440

GRAVY (calculated)

-0.579

Length

258 amino acids

Sequence
(BLAST)

001: MWRGRDALHH IPKSSFGVRM VAVGTKLYVY GGRNKTEGYN DFYSYDTVKN EWKRLAVLGE EGGPEARTFH SLASDENHVY VFGGTSQGYG VTPNSHRFRT
101: VEAYNVSEGK WAQLPDPGDN FEKRGGAGFH VVQGKIWVVY GFASSLTTDG KKTKGEKPSA RSVFASAVVG KHILIFGGET WPDPKGHFGP GTLSKEGFAL
201: DTETVWERFK GGDEPDTRGW TASTAATAYG KKGLFMHGGK TPEYTRINDL YFYAVNSA

Best Arabidopsis Sequence Match ( AT1G54040.1 )
(BLAST)

001: MVAVGTKIYI FGGRDENRNF ENFRSYDTVT SEWTFLTKLD EVGGPEARTF HSMASDENHV YVFGGVSKGG TMNTPTRFRT IEAYNIADGK WAQLPDPGDN
101: FEKRGGAGFA VVQGKIWVVY GFATSIVPGG KDDYESNAVQ FYDPASKKWT EVETTGAKPS ARSVFAHAVV GKYIIIFAGE VWPDLNGHYG PGTLSNEGYA
201: LDTETLVWEK LGEEGAPAIP RGWTAYTAAT VDGKNGLLMH GGKLPTNERT DDLYFYAVNS A

Arabidopsis Description

ESPEpithiospecifier protein [Source:UniProtKB/Swiss-Prot;Acc:Q8RY71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.