CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26745	Canola	nucleus	95.55	95.55
CDX96712	Canola	mitochondrion	84.53	83.4
CDX83831	Canola	nucleus	85.11	82.4
AT1G18610.2	Thale cress	cytosol	83.56	77.7
CDY42440	Canola	mitochondrion	51.64	55.17
CDY49133	Canola	mitochondrion, nucleus	50.68	53.47
CDX73059	Canola	cytosol, mitochondrion	58.22	51.72
GSMUA_Achr3P30430_001	Banana	cytosol	46.23	50.85
CDX96521	Canola	mitochondrion	59.57	50.0
VIT_17s0000g05150.t01	Wine grape	cytosol	57.83	49.42
KRH54725	Soybean	cytosol	54.35	45.84
Solyc03g114960.2.1	Tomato	nucleus	47.78	45.57
KRH63188	Soybean	cytosol	53.38	45.02
CDY28023	Canola	cytosol	17.99	28.44
CDY35957	Canola	cytosol	17.6	27.83
CDY48738	Canola	cytosol	15.86	25.47
CDY08215	Canola	cytosol	17.02	25.29
CDY05697	Canola	cytosol	15.67	25.16
CDX96969	Canola	peroxisome	16.63	25.07
CDY30681	Canola	cytosol	16.83	25.0
CDY49014	Canola	cytosol	16.25	24.49
CDX94790	Canola	cytosol	16.05	24.2
CDY51408	Canola	cytosol	16.05	24.2
CDY36630	Canola	cytosol	16.05	24.2
CDY64894	Canola	cytosol, mitochondrion	11.99	24.03
CDY19142	Canola	cytosol, peroxisome, plastid	16.05	23.65
CDX85317	Canola	cytosol	14.7	23.6
CDY52048	Canola	plastid	15.86	23.36
CDX86322	Canola	cytosol	15.09	22.67
CDY30169	Canola	cytosol	13.15	21.05
CDY24063	Canola	cytosol, mitochondrion	11.03	20.07
CDX75043	Canola	cytosol	17.41	19.74
CDY58438	Canola	cytosol	18.18	18.69
CDY11290	Canola	cytosol	18.18	18.69
CDX84132	Canola	cytosol	17.8	18.59
CDY43093	Canola	cytosol	2.9	18.52
CDX75048	Canola	cytosol, plastid	17.21	17.87
CDY56199	Canola	cytosol	14.12	17.68
CDY67946	Canola	cytosol	11.99	17.66
CDY03963	Canola	cytosol	15.28	16.92
CDY65743	Canola	cytosol, peroxisome, plastid	13.73	16.78
CDY03958	Canola	cytosol	15.09	16.74
CDY56200	Canola	endoplasmic reticulum, extracellular, plasma membrane	14.89	16.63
CDX92073	Canola	cytosol	14.89	16.31
CDY20194	Canola	cytosol	14.7	16.27
CDY28366	Canola	cytosol	14.51	16.06
CDX74147	Canola	cytosol, nucleus, plastid	18.76	14.56
CDY18777	Canola	cytosol	18.57	14.44
CDY40708	Canola	cytosol	18.57	14.41
CDY18797	Canola	cytosol	18.38	14.26
CDY25029	Canola	cytosol, nucleus, plastid	18.38	14.18
CDY27769	Canola	cytosol	18.18	14.11
CDY05166	Canola	cytosol, nucleus, plastid	18.18	14.11
CDY05568	Canola	plastid	18.18	14.09
CDY34042	Canola	nucleus	17.6	13.73
CDY13903	Canola	mitochondrion	16.63	12.76
CDX92598	Canola	mitochondrion	16.83	12.43
CDX75045	Canola	cytosol	17.6	10.85
CDY21313	Canola	cytosol	18.96	9.88
CDY60589	Canola	cytosol	15.09	9.85
CDX90875	Canola	cytosol	18.96	9.71
CDX83165	Canola	nucleus	17.41	9.07
CDY65828	Canola	cytosol	1.35	2.15
CDY43091	Canola	cytosol	0.19	0.88
CDY72137	Canola	cytosol	0.19	0.65

Protein Annotations

EnsemblPlants:CDY19228	EnsemblPlantsGene:GSBRNA2T00006531001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401	PFAM:PF01344
PFAM:PF13415	PFAM:PF13418	ProteinID:CDY19228	ProteinID:CDY19228.1	SEG:seg	SUPFAM:SSF117281
UniParc:UPI0004EED3C3	UniProt:A0A078G3F6	MapMan:35.1	:	:	:

Description

BnaC05g14290DBnaC05g14290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3F6]

Coordinates

chrLK032093:+:371604..374331

Molecular Weight (calculated)

55966.5 Da

IEP (calculated)

5.988

GRAVY (calculated)

-0.389

Length

517 amino acids

Sequence
(BLAST)

001: MRWERVRQQQ VGLGESSCYG GPGKRWGHTC NAIKGGSFLY VFGGYGKDNC QTNQVHVFDS AKQIWSQPII SGTPPPPRDS HTCTTVGDNL LVFGGTDGTK
101: PLNDLYILDT SSHSWKCQSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS DINDEIYYND VYVLNTETYV WKRAVTIGNP PSTRDSHTCS SWKNKIVVIG
201: GEDGHDYYLS DVHILDTDTF VWKELNTSGQ LLTPRAGHVT VSLGRNLYVF GGFTDAQNLY DDLYVLDAET CVWSKVLTMG EGPSARFSSA GACLDPHKSG
301: FLVFVGGCNK SLEALDDMFY LHTGLGYDAR VDQSVGSMSL KKQLKLKCQE QSHASSLYDN SPFRINMDHQ GVGNFGLNTG QFDQGKMMFH ARVTETFPVG
401: YSIETMIDGK VLHGVLKRPS MSNGDQANTS KIPRTLSKDQ IGATEAKDPP SNGVEGGIGL INPPDVNINT VAAAPQLDMG TVNAAPSSVA QADEASLESR
501: NAVSIDVEAT KTGPGET

Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.