Factsheet for GSMUA_Achr3P30430_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42440	Canola	mitochondrion	47.66	46.28
Bra025672.1-P	Field mustard	nucleus	50.85	46.23
CDY19228	Canola	nucleus	50.85	46.23
CDY26745	Canola	nucleus	50.85	46.23
CDY49133	Canola	mitochondrion, nucleus	47.87	45.92
Bra008135.1-P	Field mustard	mitochondrion, nucleus	47.66	45.81
AT1G18610.2	Thale cress	cytosol	52.55	44.42
Bra016550.1-P	Field mustard	mitochondrion	49.36	44.27
CDX96712	Canola	mitochondrion	49.15	44.08
VIT_17s0000g05150.t01	Wine grape	cytosol	56.38	43.8
CDX83831	Canola	nucleus	49.36	43.45
AT1G74150.1	Thale cress	cytosol, mitochondrion	51.49	42.53
Solyc03g114960.2.1	Tomato	nucleus	47.45	41.14
CDX73059	Canola	cytosol, mitochondrion	50.64	40.89
KRH03160	Soybean	cytosol	54.04	40.58
KRH54725	Soybean	cytosol	52.55	40.29
KRH56785	Soybean	nucleus	53.83	40.16
KRH63188	Soybean	cytosol	52.34	40.13
CDX96521	Canola	mitochondrion	50.64	38.64
Bra015931.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	50.43	35.53
GSMUA_Achr8P29940_001	Banana	cytosol	25.74	19.21
GSMUA_Achr8P07640_001	Banana	cytosol	19.15	18.04
GSMUA_Achr10P...	Banana	cytosol	8.09	16.74
GSMUA_Achr9P23600_001	Banana	cytosol	18.72	15.66
GSMUA_Achr2P02340_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.49	14.99
GSMUA_Achr6P20340_001	Banana	plastid	20.43	14.08
GSMUA_Achr5P26950_001	Banana	mitochondrion, nucleus	18.51	12.22
GSMUA_Achr3P23920_001	Banana	mitochondrion	17.45	11.53
GSMUA_Achr10P...	Banana	nucleus	11.28	10.71
GSMUA_Achr6P29460_001	Banana	cytosol	20.0	8.81

Protein Annotations

EnsemblPlants:GSMUA_Achr3P30430_001	EnsemblPlants:GSMUA_Achr3T30430_001	EnsemblPlantsGene:GSMUA_Achr3G30430_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR23244	PANTHER:PTHR23244:SF401
PFAM:PF13418	PFAM:PF13854	SUPFAM:SSF50965	UniParc:UPI000295B803	UniProt:M0SJ57	MapMan:35.1

Description

Putative RING finger protein B [Source:GMGC_GENE;Acc:GSMUA_Achr3G30430_001]

Coordinates

chr3:-:29167148..29174105

Molecular Weight (calculated)

52315.8 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.360

Length

470 amino acids

Sequence
(BLAST)

001: MWWELVHADA EAEETADQGA SEAGGICGPG VRWGHTCNAV KGGRYLYVFG GYGRDNCQTN DVHVFDTVQQ SWSKPMLKGV PPSPRDSHSC TTVGDKLFVF
101: GGTDGKNPLK DMHILDTSSN TWIVPNLNGE GPDAREGHTA VLVDKRLFIF GGCGKSVTHE EKYFNDLYIL DTGKFSQSIF LNFTLTWERA VTSGTPPSAR
201: DCHSCSSWKN KIIVLGGEDS SDFYLADVHI LNADTLAWEP MKTAGKIFPP RAGHTTVALG SNLFVFGGFT DARNLYDDLY VLNVESRSWS KVIPENRGPS
301: ARFSVAGDCL DERKGIIVFL GGCNKSLEAL DDMYYLHTDM PVLNGLCDQR PAKLSIRREL RKKCRQDYLP SQRILKNNYF LKKQMISDSL HADHLRETDQ
401: AGTMVSDLKP AGEITFEARV TNSNKYGYAI ETIIDGKLLH GMLFSCTSNL SQDNHAYHKK YEIAFCFVQL

Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)

001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES

Arabidopsis Description

F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.