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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 3
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d040606_P001 Maize cytosol 92.01 90.97
Zm00001d009123_P001 Maize cytosol 90.21 88.48
Os01t0300900-01 Rice cytosol 85.48 83.97
TraesCS3D01G195400.1 Wheat cytosol, mitochondrion, nucleus, vacuole 79.12 80.83
TraesCS3B01G221000.2 Wheat cytosol, mitochondrion, nucleus, vacuole 79.28 80.33
TraesCS3A01G192200.1 Wheat cytosol, mitochondrion, nucleus, vacuole 79.28 80.2
HORVU3Hr1G040720.1 Barley mitochondrion, nucleus, peroxisome, vacuole 78.47 77.71
GSMUA_Achr8P29940_001 Banana cytosol 66.72 64.92
VIT_14s0060g01090.t01 Wine grape nucleus 57.26 54.84
KRG90521 Soybean peroxisome 53.67 52.14
KRH33805 Soybean nucleus 53.34 51.82
PGSC0003DMT400007146 Potato cytosol 51.22 48.01
KRH68432 Soybean cytosol, nucleus, plastid 49.59 47.95
KRG96716 Soybean endoplasmic reticulum, nucleus, plasma membrane 50.41 43.1
Solyc01g100600.2.1 Tomato cytosol 32.95 40.48
KXG34722 Sorghum cytosol 12.72 23.15
KXG37190 Sorghum cytosol 17.62 21.51
EES16101 Sorghum cytosol, nucleus, plastid 17.62 20.04
EER90565 Sorghum plastid 18.92 17.6
OQU85983 Sorghum cytosol 14.52 17.02
KXG26585 Sorghum nucleus 16.15 15.05
OQU83951 Sorghum mitochondrion 16.64 14.85
KXG23613 Sorghum mitochondrion 16.64 14.74
KXG36320 Sorghum cytosol, nucleus, peroxisome 16.15 9.16
Protein Annotations
EnsemblPlants:EES00630EnsemblPlantsGene:SORBI_3003G143900EntrezGene:8060319Gene3D:2.120.10.80GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_1PANTHER:PTHR23244PANTHER:PTHR23244:SF417
PFAM:PF13415PFAM:PF13418ProteinID:EES00630ProteinID:EES00630.1RefSeq:XP_002455510.1SEG:seg
SMART:SM00612SUPFAM:SSF117281UniParc:UPI0001A84441UniProt:C5XI56MapMan:35.1:
Description
hypothetical protein
Coordinates
chr3:+:14442569..14447347
Molecular Weight (calculated)
66428.7 Da
IEP (calculated)
8.772
GRAVY (calculated)
-0.464
Length
613 amino acids
Sequence
(BLAST)
001: MERRRKAMWL YPKVVGFNPP ERWGHSACFF EGVVYVFGGC CGGLHFSDVL TLNVETMAWS SLATTGQRPG TRDSHGAALV GHRMLVFGGT NGGKKVNDLH
101: VLDLRTREWT RPQCKGAPPS PRESHTVTVV GGDRLVVFGG SGEGEGNYLS DVHVLDVPTM TWSTPEVKAP PAPRDSHSAV AVGSRLFVFG GDCGDRYHGE
201: VDVLDVDTMT WSRFPVKGAS PGVRAGHAAM SVGSKVYIIG GVGDKQYYSD VWVLDVTNRS WSQLEVCGQQ PQGRFSHTAV VMNTDIAVYG GCGEDERPLN
301: ELLILQLGSE HPNGRYNISM CKVLSNHWSQ EKRKFLRSET KDASVSNGKM VQKPREAEIE QRNPFLRGLE NGRAKRRKTG EVRPNEPESE QEEHSLSLSQ
401: HSSPSQSDQE QNGAHKLSAS PNTSISALQP FVRLKANGTL RAPGPGGISS RPLKTDQFLR TIAPQHRQEV QFLSSDHKPQ PRPPGPPLIG AEVHGTVDGA
501: FDSGYLMTAV VNGQLFRGVL FAPGPGVTAP RPTVHHQILT SSAVPPQQQR PLLAHAIPVH TRPVPQATGF VLPDCAHHAR QGFPAKAVKS EPERGSSDLH
601: DVVLTLGGPG GGK
Best Arabidopsis Sequence Match ( AT1G18610.2 )
(BLAST)
001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
Arabidopsis Description
F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.