CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041692_P001	Maize	nucleus	84.04	83.43
HORVU5Hr1G025310.1	Barley	cytosol	65.49	73.39
Os12t0540800-01	Rice	extracellular	71.06	72.68
TraesCS5D01G106400.1	Wheat	cytosol	70.13	71.86
TraesCS5A01G094000.1	Wheat	cytosol	69.94	71.54
TraesCS5B01G100100.1	Wheat	cytosol	70.13	71.46
GSMUA_Achr2P02340_001	Banana	cytosol, mitochondrion, nucleus, plastid	55.1	44.07
GSMUA_Achr6P20340_001	Banana	plastid	54.92	43.4
EER90565	Sorghum	plastid	52.69	43.1
VIT_14s0060g02410.t01	Wine grape	plastid	53.06	42.43
KRG92884	Soybean	nucleus	48.61	39.76
KRG96823	Soybean	cytosol, plastid	47.68	39.6
Solyc01g099350.2.1	Tomato	extracellular	48.98	39.46
KRH68531	Soybean	nucleus	48.05	39.36
CDY05166	Canola	cytosol, nucleus, plastid	48.24	39.04
CDX74147	Canola	cytosol, nucleus, plastid	48.24	39.04
CDY27769	Canola	cytosol	48.05	38.89
Bra039439.1-P	Field mustard	cytosol	48.05	38.83
CDY18797	Canola	cytosol	47.87	38.74
Bra020582.1-P	Field mustard	cytosol, nucleus, plastid	47.87	38.68
CDY05568	Canola	plastid	47.87	38.68
CDY25029	Canola	cytosol, nucleus, plastid	48.05	38.66
Bra040219.1-P	Field mustard	cytosol	47.68	38.65
AT3G05420.2	Thale cress	cytosol	47.87	38.56
CDY18777	Canola	cytosol	47.5	38.5
AT5G27630.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	47.68	38.47
CDY40708	Canola	cytosol	47.5	38.44
Bra001147.1-P	Field mustard	cytosol	48.42	38.21
OQU85983	Sorghum	cytosol	35.81	36.9
PGSC0003DMT400063503	Potato	extracellular	20.96	33.73
KXG23613	Sorghum	mitochondrion	27.64	21.53
OQU83951	Sorghum	mitochondrion	27.27	21.4
KXG34722	Sorghum	cytosol	13.17	21.07
KXG37190	Sorghum	cytosol	17.44	18.73
EES00630	Sorghum	cytosol	20.04	17.62
KXG26585	Sorghum	nucleus	16.51	13.53
KXG36320	Sorghum	cytosol, nucleus, peroxisome	18.92	9.44

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8067249	UniProt:C5YPE4	ncoils:Coil	EnsemblPlants:EES16101
ProteinID:EES16101	ProteinID:EES16101.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PFAM:PF13415	PANTHER:PTHR23244	PANTHER:PTHR23244:SF398
EnsemblPlantsGene:SORBI_3008G118400	SUPFAM:SSF117281	unigene:Sbi.19713	UniParc:UPI0001A8842D	RefSeq:XP_002442263.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:53079213..53084498

Molecular Weight (calculated)

59117.9 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.501

Length

539 amino acids

Sequence
(BLAST)

001: MAAAKGPVAV GSAIPSSIAP EEPKVVAPEE ENGEMADIQD KEVSMEGLCS IGAYDQWTPL SVSGQLPKPR YKHGAAVVQQ KMYVFGGNHN GRYLGDIQVL
101: DFKTFSWSKL EAKSQAGPSE SAGEVPFSAC AGHSVIQWGN KILCLAGHTR EPAESLSVKE FDPQTCTWST LRTYGRSPSS RGGQSVTLVG ETLVVFGGEG
201: HGRSLLNDLH ILDLESMTWD EFETTGTPPS PRSEHAAACF AERYLLIFGG GSHSTCFSDL HLLDTQTMEW SRPKQQGVTP EPRAGHAGVT IGEYWFITGG
301: GNSRKGVSVT LVLNMSTYEW SVLTDLEAHA PPTSEGSSLV MYTINGENFL VSFGGYSGRY SNQAYALKAS LKPSVPSQQI DEAESNGFAP LSVAENSSRK
401: VIFEIEELKD VKPGNRADNS KTLGQVATDE QNQIEDRLNH ERLQSLRLKQ ELADVENRNA ELTEELHLVR DKLSIEQTRA SQLENEVSEI QQRLQKMDIL
501: EKEFESLRSE LDSTVSEEAA SSGNQLHRSR SRGFWRWNG

Best Arabidopsis Sequence Match ( AT3G05420.2 )
(BLAST)

001: MAMPRATSGP AYPERFYAAA SYVGLDGSDS SAKNVISKFP DDTALLLYAL YQQATVGPCN TPKPSAWRPV EQSKWKSWQG LGTMPSIEAM RLFVKILEED
101: DPGWYSRASN DIPDPVVDVQ INQRAKDEPV VENGSTFSET KTISTENGRL AETQDKDVVS EDSNTVSVYN QWTAPQTSGQ RPKARYEHGA AVIQDKMYIY
201: GGNHNGRYLG DLHVLDLKSW TWSRVETKVA TESQETSTPT LLAPCAGHSL IAWDNKLLSI GGHTKDPSES MQVKVFDPHT ITWSMLKTYG KPPVSRGGQS
301: VTMVGKTLVI FGGQDAKRSL LNDLHILDLD TMTWDEIDAV GVSPSPRSDH AAAVHAERFL LIFGGGSHAT CFDDLHVLDL QTMEWSRPAQ QGDAPTPRAG
401: HAGVTIGENW FIVGGGDNKS GASESVVLNM STLAWSVVAS VQGRVPLASE GLSLVVSSYN GEDVLVAFGG YNGRYNNEIN LLKPSHKSTL QTKTLEAPLP
501: GSLSAVNNAT TRDIESEVEV SQEGRVREIV MDNVNPGSKV EGNSERIIAT IKSEKEELEA SLNKERMQTL QLRQELGEAE LRNTDLYKEL QSVRGQLAAE
601: QSRCFKLEVD VAELRQKLQT LETLQKELEL LQRQKAASEQ AAMNAKRQGS GGVWGWLAGS PQEKDDDSP

Arabidopsis Description

ACBP4acyl-CoA binding protein 4 [Source:TAIR;Acc:AT3G05420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.