CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96823	Soybean	cytosol, plastid	93.47	94.76
KRG92884	Soybean	nucleus	83.59	83.46
VIT_14s0060g02410.t01	Wine grape	plastid	76.9	75.07
CDY05166	Canola	cytosol, nucleus, plastid	72.8	71.92
CDY27769	Canola	cytosol	72.8	71.92
Bra039439.1-P	Field mustard	cytosol	72.64	71.66
Solyc01g099350.2.1	Tomato	extracellular	72.8	71.6
AT3G05420.2	Thale cress	cytosol	72.49	71.3
CDY18777	Canola	cytosol	70.97	70.23
CDY18797	Canola	cytosol	70.82	69.97
Bra040219.1-P	Field mustard	cytosol	70.52	69.77
CDY40708	Canola	cytosol	70.06	69.22
CDX74147	Canola	cytosol, nucleus, plastid	69.45	68.62
PGSC0003DMT400063503	Potato	extracellular	34.8	68.36
AT5G27630.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	69.15	68.11
Bra001147.1-P	Field mustard	cytosol	69.76	67.2
Bra020582.1-P	Field mustard	cytosol, nucleus, plastid	66.87	65.97
CDY05568	Canola	plastid	66.57	65.67
CDY25029	Canola	cytosol, nucleus, plastid	66.57	65.37
GSMUA_Achr2P02340_001	Banana	cytosol, mitochondrion, nucleus, plastid	66.41	64.84
Os03t0835600-01	Rice	plastid	63.68	63.97
EER90565	Sorghum	plastid	63.83	63.73
GSMUA_Achr6P20340_001	Banana	plastid	65.2	62.9
TraesCS4A01G356400.2	Wheat	plastid	62.92	61.88
TraesCS5B01G515800.1	Wheat	cytosol, peroxisome, plastid	62.77	61.73
TraesCS5D01G515900.2	Wheat	plastid	62.61	61.58
Zm00001d034758_P003	Maize	plastid	61.85	59.77
HORVU5Hr1G117970.2	Barley	plastid	62.46	59.05
Zm00001d046434_P003	Maize	plastid	50.76	54.84
HORVU5Hr1G025310.1	Barley	cytosol	39.82	54.47
TraesCS5D01G106400.1	Wheat	cytosol	42.1	52.66
TraesCS5A01G094000.1	Wheat	cytosol	41.79	52.18
TraesCS5B01G100100.1	Wheat	cytosol	41.79	51.98
Os12t0540800-01	Rice	extracellular	41.34	51.61
Zm00001d012892_P002	Maize	plastid	61.09	51.34
EES16101	Sorghum	cytosol, nucleus, plastid	39.36	48.05
Zm00001d041692_P001	Maize	nucleus	36.02	43.65
KRG92113	Soybean	cytosol	23.71	42.51
KRH34674	Soybean	cytosol	32.37	42.26
KRG92111	Soybean	cytosol	8.36	40.15
KRH11220	Soybean	mitochondrion	24.32	22.28
KRH43755	Soybean	cytosol	11.09	22.26
KRH02216	Soybean	mitochondrion	23.86	22.18
KRH21038	Soybean	mitochondrion	23.86	22.11
KRH50909	Soybean	nucleus	23.86	21.6
KRG92046	Soybean	cytosol	14.74	19.48
KRH33805	Soybean	nucleus	17.93	18.7
KRG90521	Soybean	peroxisome	17.93	18.7
KRH54725	Soybean	cytosol	16.72	17.94
KRH68432	Soybean	cytosol, nucleus, plastid	17.17	17.82
KRH63188	Soybean	cytosol	16.41	17.62
KRH03160	Soybean	cytosol	16.57	17.41
KRH56785	Soybean	nucleus	16.41	17.14
KRG96716	Soybean	endoplasmic reticulum, nucleus, plasma membrane	17.78	16.32
KRH63715	Soybean	nucleus	16.26	16.21
KRH54239	Soybean	nucleus	15.96	15.91
KRH51088	Soybean	cytosol	19.3	11.81
KRH02069	Soybean	cytosol	10.03	10.71

Protein Annotations

Gene3D:1.20.80.10	EntrezGene:100813240	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02002119	InterPro:Acyl-CoA-binding_protein
InterPro:Acyl-CoA-binding_sf	ncoils:Coil	InterPro:FERM/acyl-CoA-bd_prot_sf	EnsemblPlantsGene:GLYMA_03G236500	GO:GO:0000062	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000582	InterPro:IPR014352	InterPro:IPR015915	UniProt:K7KGN3
EnsemblPlants:KRH68531	ProteinID:KRH68531	ProteinID:KRH68531.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00887
PFAM:PF01344	PFAM:PF13415	PFAM:PF13418	PFscan:PS51228	PANTHER:PTHR23244	PANTHER:PTHR23244:SF336
SUPFAM:SSF117281	SUPFAM:SSF47027	UniParc:UPI000233A1B9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:43635927..43646500

Molecular Weight (calculated)

71617.0 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.360

Length

658 amino acids

Sequence
(BLAST)

001: MAMARATSGL QYPERFYAAA SYVGFDGSSP TKTLTSKFAK STALLLYSLY QQASVGPCNI PEPSTWKLVE HSKWASWNQL GNMSSTEAMR LFVKILEEED
101: PGWYSRASNS VVEPVIDVQM NQNSKVEPVI ENGNSYPETK TISTQNGSEV GTQDKDIVVE GFGSVEVYDQ WIAPPVSGGN PKARYEHGAA VVQDKLYIYG
201: GNHNGRYLND LHVLDLRSWT WSKIEAKTGV ESPTTSIPCA GHSLIPWGNK LLSIAGHTKD PSESIQVKEF DLETAAWSTL KIFGKAPVSR GGQSVNLVGK
301: TLVIFGGQDA KRTLLNDLHI LDLETMTWDE IDAVGVPPSP RSDHTAAVHV DRYLLIFGGG SHATCYNDLH VLDLQTMEWS RPTQLGEIPS PRAGHAGVTV
401: GENWFIVGGG DNKSGVSETV VLNMSTLTWS VVTSVQGRVP VASEGLSLVV SSYDGEDILV SFGGYNGRYN NEVYVLKPSH KSTLQSKIIE NSIPDSVSAI
501: PNVTNVESEF EAGHDADPPV CIIDADPPKS KGDLVSVLKA EKEELESSLS KEKQHALQLK QDLVEAESRN SDLYKELQSV RGQLASEQSR CFKLEVEVAE
601: LGQKLQTIGT LQKELELLQR QKAASEQAAL NAKQRQSSGG VWGWLAGTPP PSRNADDA

Best Arabidopsis Sequence Match ( AT3G05420.2 )
(BLAST)

001: MAMPRATSGP AYPERFYAAA SYVGLDGSDS SAKNVISKFP DDTALLLYAL YQQATVGPCN TPKPSAWRPV EQSKWKSWQG LGTMPSIEAM RLFVKILEED
101: DPGWYSRASN DIPDPVVDVQ INQRAKDEPV VENGSTFSET KTISTENGRL AETQDKDVVS EDSNTVSVYN QWTAPQTSGQ RPKARYEHGA AVIQDKMYIY
201: GGNHNGRYLG DLHVLDLKSW TWSRVETKVA TESQETSTPT LLAPCAGHSL IAWDNKLLSI GGHTKDPSES MQVKVFDPHT ITWSMLKTYG KPPVSRGGQS
301: VTMVGKTLVI FGGQDAKRSL LNDLHILDLD TMTWDEIDAV GVSPSPRSDH AAAVHAERFL LIFGGGSHAT CFDDLHVLDL QTMEWSRPAQ QGDAPTPRAG
401: HAGVTIGENW FIVGGGDNKS GASESVVLNM STLAWSVVAS VQGRVPLASE GLSLVVSSYN GEDVLVAFGG YNGRYNNEIN LLKPSHKSTL QTKTLEAPLP
501: GSLSAVNNAT TRDIESEVEV SQEGRVREIV MDNVNPGSKV EGNSERIIAT IKSEKEELEA SLNKERMQTL QLRQELGEAE LRNTDLYKEL QSVRGQLAAE
601: QSRCFKLEVD VAELRQKLQT LETLQKELEL LQRQKAASEQ AAMNAKRQGS GGVWGWLAGS PQEKDDDSP

Arabidopsis Description

ACBP4acyl-CoA binding protein 4 [Source:TAIR;Acc:AT3G05420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.