Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G195400.1 | Wheat | cytosol, mitochondrion, nucleus, vacuole | 96.86 | 97.67 |
| TraesCS3A01G192200.1 | Wheat | cytosol, mitochondrion, nucleus, vacuole | 96.86 | 96.7 |
| HORVU3Hr1G040720.1 | Barley | mitochondrion, nucleus, peroxisome, vacuole | 91.24 | 89.18 |
| Os01t0300900-01 | Rice | cytosol | 82.15 | 79.65 |
| EES00630 | Sorghum | cytosol | 80.33 | 79.28 |
| Zm00001d040606_P001 | Maize | cytosol | 78.02 | 76.13 |
| Zm00001d009123_P001 | Maize | cytosol | 76.2 | 73.76 |
| GSMUA_Achr8P29940_001 | Banana | cytosol | 65.29 | 62.7 |
| VIT_14s0060g01090.t01 | Wine grape | nucleus | 56.36 | 53.28 |
| KRH33805 | Soybean | nucleus | 53.55 | 51.35 |
| KRG90521 | Soybean | peroxisome | 53.06 | 50.87 |
| KRH68432 | Soybean | cytosol, nucleus, plastid | 50.41 | 48.11 |
| PGSC0003DMT400007146 | Potato | cytosol | 49.75 | 46.02 |
| KRG96716 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 50.91 | 42.96 |
| Solyc01g100600.2.1 | Tomato | cytosol | 31.57 | 38.28 |
| TraesCS5B01G165000.1 | Wheat | mitochondrion | 12.89 | 23.85 |
| TraesCS5B01G515900.1 | Wheat | mitochondrion | 17.36 | 20.87 |
| TraesCS5B01G100100.1 | Wheat | cytosol | 16.69 | 19.09 |
| TraesCS6B01G450700.1 | Wheat | cytosol | 15.54 | 17.74 |
| TraesCS5B01G515800.1 | Wheat | cytosol, peroxisome, plastid | 18.35 | 16.59 |
| TraesCS2B01G361300.1 | Wheat | nucleus | 16.69 | 15.28 |
| TraesCS5B01G100500.1 | Wheat | mitochondrion | 16.69 | 14.72 |
| TraesCS2B01G248800.1 | Wheat | cytosol | 16.03 | 8.92 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G221000.2 | EnsemblPlantsGene:TraesCS3B01G221000 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF401 | PFAM:PF13415 |
| PFAM:PF13418 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3B:-:273238316..273241687
Molecular Weight (calculated)
65797.9 Da
IEP (calculated)
8.269
GRAVY (calculated)
-0.495
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MERRRKAMWL YPKVVGFNPP ERWGHSACFF EGVIYVFGGC CGGLHFSDVL TLNLDTMAWS SLATKGQRPG TRDSHGAALI GHRMLVFGGT NGNKKVNDLH
101: VLDLRTKEWS RPPCKGTPPS PRESHTVTTA AGGDKLVVFG GSGEGEGNYL NDVHVLDLPT MTWTSPQVAH EVIPAPRDSH GAVTVGNRLF VYGGDCGDRY
201: HGEVDVLDMG TMAWSRFSVK GASPGVRAGH AALGIGSKIY VIGGVGDKQY YSDAWILDVV DRSWTQLETC GQQPQGRFSH SAVIMNTDIA IYGGCGEDER
301: PLNELLVLQL GSGHPNGRYN ISMCKILSNH WSQEKHKLLR AQHQKDASPS NPEFGHKPRE AEIEQRNPFL RGLENGHVKR RKTGDAGPNE MELEQEEHSL
401: SLSQHSSPSQ SEKDQEQNGA QMITGSPNGL ISSAMQPLVR LNANGSRRTS GGIKTDQFLR GIAPQQRHEM QFLTAEPKQH RPSGPPLIGA EVHGTVDGAF
501: DSGYLVTAVV SGQLFRGVLF APGPGVTAPV MQHQILNSSA IPPQHQHAFP VHARPLPQAT GFVRPDYSHH ARRGFPARVV KSEPERSGSD LHHVVLTLGG
601: PGRGN
101: VLDLRTKEWS RPPCKGTPPS PRESHTVTTA AGGDKLVVFG GSGEGEGNYL NDVHVLDLPT MTWTSPQVAH EVIPAPRDSH GAVTVGNRLF VYGGDCGDRY
201: HGEVDVLDMG TMAWSRFSVK GASPGVRAGH AALGIGSKIY VIGGVGDKQY YSDAWILDVV DRSWTQLETC GQQPQGRFSH SAVIMNTDIA IYGGCGEDER
301: PLNELLVLQL GSGHPNGRYN ISMCKILSNH WSQEKHKLLR AQHQKDASPS NPEFGHKPRE AEIEQRNPFL RGLENGHVKR RKTGDAGPNE MELEQEEHSL
401: SLSQHSSPSQ SEKDQEQNGA QMITGSPNGL ISSAMQPLVR LNANGSRRTS GGIKTDQFLR GIAPQQRHEM QFLTAEPKQH RPSGPPLIGA EVHGTVDGAF
501: DSGYLVTAVV SGQLFRGVLF APGPGVTAPV MQHQILNSSA IPPQHQHAFP VHARPLPQAT GFVRPDYSHH ARRGFPARVV KSEPERSGSD LHHVVLTLGG
601: PGRGN
001: MRWERVRQLQ QQVGLGESSS GPGKRWGHTC NAIKGGSFLY VFGGYGRDNC QTNQVHVFDA AKQIWTQPMI NGTPPPPRDS HSCTTVGDNL FVFGGTDGVN
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
101: PLKDLYILDT SSHTWKCPSV RGEGPEAREG HSATLVGKRL FVFGGCGKSS GINEEIYYND VYIFNTETFV WKRAVTIGNP PSARDSHSCS SWKNKLVVIG
201: GEDGHDYYLS DVHILDTDTL IWKELNTSGQ LLTPRAGHVT VSLGRNFFVF GGFTDAQNLY DDLYVLDVDT CIWSKVLTMG EGPSARFSSA GACLDPHKAG
301: FLVIVGGCNK NLEALDDMFY LQTGLGYDAR FDQNVGMLSL KKQLKIKCQE QSHASSLYDK SLVRINMDHQ GRGNFGLNTC QFNEGKMMFQ ARITESYPVG
401: YTMETMIDGK VLRGVLFSNK RSSILPADQS FSRKRPAMSN GDQDNRSKIS RTLIKDQANA VESKDSQLNG MEAGIDTISN PLGVNITTVA VAPHETETSV
501: VTSDAKNQDA SQLDMGTVNT VNTAPSSVPQ VDEASLESRN AITIDDRANK TGLGES
Arabidopsis Description
F25I16.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ82]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.