Factsheet for PGSC0003DMT400050172

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007320.1.1	Tomato	cytosol	93.93	83.43
Bra040844.1-P	Field mustard	cytosol	22.02	73.68
KRG92046	Soybean	cytosol	72.36	64.66
Bra005274.1-P	Field mustard	cytosol	53.93	64.34
CDX75043	Canola	cytosol	65.62	64.04
Bra005279.1-P	Field mustard	cytosol	46.29	62.8
GSMUA_Achr8P07640_001	Banana	cytosol	70.11	62.53
CDX84132	Canola	cytosol	68.09	61.21
CDY67946	Canola	cytosol	47.87	60.68
CDX75048	Canola	cytosol, plastid	67.87	60.64
TraesCS4A01G356300.1	Wheat	mitochondrion	67.64	59.84
Os03t0835800-02	Rice	cytosol	66.97	59.48
TraesCS5B01G515900.1	Wheat	mitochondrion	67.19	59.44
VIT_13s0074g00620.t01	Wine grape	cytosol	73.93	59.17
Zm00001d034759_P001	Maize	cytosol	66.29	59.0
KXG37190	Sorghum	cytosol	66.07	58.57
AT2G36360.4	Thale cress	cytosol	67.64	58.11
Bra040845.1-P	Field mustard	cytosol, peroxisome, plastid	46.97	57.26
HORVU5Hr1G117920.1	Barley	cytosol	67.19	57.17
TraesCS5D01G516000.1	Wheat	mitochondrion	65.62	57.03
Bra005272.1-P	Field mustard	cytosol	58.2	44.97
CDX75045	Canola	cytosol	67.42	35.76
PGSC0003DMT400070308	Potato	cytosol	16.85	20.55
PGSC0003DMT400058372	Potato	mitochondrion	13.71	19.06
PGSC0003DMT400046550	Potato	cytosol	4.72	18.58
PGSC0003DMT400007146	Potato	cytosol	22.92	15.6
PGSC0003DMT400050298	Potato	cytosol, plastid	11.69	13.83
PGSC0003DMT400039402	Potato	nucleus	20.45	13.46
PGSC0003DMT400063503	Potato	extracellular	10.11	13.43
PGSC0003DMT400060067	Potato	cytosol	17.3	10.31
PGSC0003DMT400058369	Potato	mitochondrion	2.02	2.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400050172	EnsemblPlantsGene:PGSC0003DMG400019479	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	ncoils:Coil	PANTHER:PTHR23244	PANTHER:PTHR23244:SF405	PFAM:PF13415
PFAM:PF13418	PGSC:PGSC0003DMG400019479	SEG:seg	SUPFAM:SSF117281	UniParc:UPI0002951F69	UniProt:M1BPV4
MapMan:35.1	:	:	:	:	:

Description

Kelch repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019479]

Coordinates

chr11:-:4994576..5004519

Molecular Weight (calculated)

49003.5 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.227

Length

445 amino acids

Sequence
(BLAST)

001: MHYWVRASPA DFAGAIPQPR SGHTAINIGK SKVVVFGGLI DKKFLSDITV YDIENKLWFQ PECTGSGSDG QVGPSPRAFH VAVAIDCHMF IFGGRSGGRR
101: HANAMLGDFW VLDTDIWQWS ELTSFGDIPS ARDFAAASAI GNSKIVMFGG WDGKKWLSDV YILDTSTVFD MTLEWRELAV LGAMPPPRCG HTATMVEKRL
201: LVYGGRGGGG PIMADLWALK GLIEEGQAPT ARCGHTVTSG GLHLLLFGGH GTGGWLSRYD VYYNDCVVLD RVSVQWKRLA TTNEPPVARA YHSMTSIGSR
301: YLLFGGFDGK STYGDLWWLV PEDDPIAKRV TAPPPKAIHE NQDASMTSME KERQMQEDAV SELQKRIGIS VSISNPNAKK IVDELEDTEL LELASKFIGE
401: GALSNKEAVQ ALRDHWSKSS PKSIQLKELS PLLRDYKHCV TRIKE

Best Arabidopsis Sequence Match ( AT2G36360.1 )
(BLAST)

001: MHHWVQASSS DFSGTPPQAR SGHTAVNVGK SMVVVFGGLV DKKFLSDIIV YDIENKLWFE PECTGSESEG QVGPTPRAFH VAITIDCHMF IFGGRSGGKR
101: LGDFWVLDTD IWQWSELTSF GDLPTPRDFA AAAAIGSQKI VLCGGWDGKK WLSDVYVMDT MSLEWLELSV SGSLPPPRCG HTATMVEKRL LVFGGRGGGG
201: PIMGDLWALK GLIDEERETP GWTQLKLPGQ APSSRCGHTV TSGGHYLLLF GGHGTGGWLS RYDVYYNDTI ILDRVTAQWK RLPIGNEPPP PRAYHTMTCI
301: GARHLLIGGF DGKLTFGDLW WLVPEDDPIA KRSSVPQVVN PPEIKESERE LDKERGQDGF SIVDLQQKMG ISVSSGLRLQ IPEESEDQEF VELGTRLIEG
401: DVVDERASMI QMAAQALRQH WKQSTPRTLQ LKELGSLLRD YQRLVTRIFT TQSSLTSADF GLPGTKTFTF YHIKSSSELR INDISKLLEE YKTLVI

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT2G36360]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.