Factsheet for PGSC0003DMT400050298

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058372	Potato	mitochondrion	46.01	54.06
Solyc01g067480.2.1	Tomato	mitochondrion	69.68	39.88
VIT_05s0020g01740.t01	Wine grape	mitochondrion	64.63	33.89
KRH02216	Soybean	mitochondrion	62.5	33.19
CDY13903	Canola	mitochondrion	58.51	32.64
KRH50909	Soybean	nucleus	62.77	32.46
KRH11220	Soybean	mitochondrion	61.17	32.03
CDX92598	Canola	mitochondrion	58.24	31.29
Bra002170.1-P	Field mustard	mitochondrion	58.24	31.29
KRH21038	Soybean	mitochondrion	59.04	31.27
AT5G18590.1	Thale cress	mitochondrion	57.98	30.79
GSMUA_Achr3P23920_001	Banana	mitochondrion	55.59	29.4
GSMUA_Achr5P26950_001	Banana	mitochondrion, nucleus	55.32	29.21
HORVU4Hr1G032550.32	Barley	mitochondrion	52.93	29.05
TraesCSU01G068300.1	Wheat	mitochondrion	52.39	28.93
TraesCS4D01G147200.1	Wheat	mitochondrion	52.13	28.66
OQU83951	Sorghum	mitochondrion	51.86	28.38
TraesCS4A01G167800.1	Wheat	mitochondrion	51.33	28.22
Zm00001d048718_P010	Maize	mitochondrion	52.13	28.2
KXG23613	Sorghum	mitochondrion	51.33	27.89
TraesCS5A01G094400.1	Wheat	mitochondrion	50.8	27.8
TraesCS5D01G106700.1	Wheat	mitochondrion	49.73	27.26
TraesCS5B01G100500.1	Wheat	mitochondrion	49.47	27.11
PGSC0003DMT400070308	Potato	cytosol	26.06	26.85
Os12t0538800-01	Rice	mitochondrion, nucleus	49.2	26.5
HORVU5Hr1G025430.25	Barley	mitochondrion	47.61	25.61
Zm00001d023868_P004	Maize	plasma membrane, plastid, vacuole	49.2	24.18
PGSC0003DMT400046550	Potato	cytosol	3.99	13.27
PGSC0003DMT400063503	Potato	extracellular	11.44	12.84
PGSC0003DMT400050172	Potato	cytosol, mitochondrion, plastid	13.83	11.69
Os11t0657000-01	Rice	mitochondrion	4.79	11.11
PGSC0003DMT400039402	Potato	nucleus	19.41	10.8
PGSC0003DMT400007146	Potato	cytosol	18.62	10.7
PGSC0003DMT400058369	Potato	mitochondrion	8.78	10.48
PGSC0003DMT400060067	Potato	cytosol	15.69	7.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400050298	EnsemblPlantsGene:PGSC0003DMG400019543	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR23244	PANTHER:PTHR23244:SF308	PFAM:PF13418	PGSC:PGSC0003DMG400019543
SEG:seg	SUPFAM:SSF117281	UniParc:UPI000296C980	UniProt:M1BQ37	MapMan:35.1	:

Description

RanGAP1 interacting protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019543]

Coordinates

chr5:-:30414089..30417996

Molecular Weight (calculated)

41268.5 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.178

Length

376 amino acids

Sequence
(BLAST)

001: MVHRICNTEI ADMAPRGGGR SRYSGKRTVD PVTSPLMSSV APDQAPSLPE LPTPVTPDSV AVYISVSSTS VGIETPRNDI VSTTLSNATD GTRIPIEIIM
101: GRGKRFLWLE GKQTLQVTVS VWAFDTETEC WPLLEAKGDV PVARSGHTVL RASSVLILFG GEDAKRRKLN DLHMFDLKSL TWLPLHCTGT CPSPRSNHVS
201: SLYDDKLLLI FGGSSKSRTL NDLYMLDFET MAWSRTKICG FHPSPRAGCC GVLCGTKWYI AGGGSRKRRH AETLIFDVLK LEWSVAVASP ASSITTNKGF
301: SLVLVQHKER DFLVAFGRFK KDPSNEIEPV NGTTTSYVDN ARLEHDVAFL KVIMDDTQKE LHTKGGVLAG ERARAF

Best Arabidopsis Sequence Match ( AT5G18590.1 )
(BLAST)

001: MFSFSKRRMR LGRVKKVQLS DSVQGYKSPL RVTKRADSSS NEAAVAATSY SDELDFQPSS GNSENWMVLS VNGEKPAPRF NHAAATIGNK MIVVGGESGS
101: GLLDDVQVLN FDSCTWSTAS SKVYLSPSSL PLMIPAWKGH CLVSWGKKVL LVGGKTDPSS DRVSVWAFDT DSECWSLMDA KGDLPVSRSG HTVVRASSVL
201: ILFGGEDSKK RKLNDLHMFD LKSSTWLPLN CTGTRPCARS HHVATLFDDK ILFVFGGSGK NKTLNDLYSL DFETMVWSRI KIRGFHPSPR AGSCGVLCGT
301: KWYITGGGSR KKRHAETLVF DILKVEWSVA SISSQSSVTS NKGFSLVLLQ HKDKDFLVAF GGTKKDPSNQ VDAFTIDKNK SESPTHPQTT SKKNPGRLLF
401: GKRSSSSAVL TSDESVKASS QRLIDSVARQ KLASAIEEHG GSGRRSLSEI AFGDHRNPPS GNVSLRKQFS TEEEYRAVIE PAKCSEEDIS VPPPTTDDNT
501: GGAKITAEKT LSMVSDREIL SLQKQCSETY PLENVDGALI FQEMDNINFA GSASSSSVYQ FHEAKMTALI RRNGILEGQL EAALAGREAA ERNVSVALRS
601: KQETDKKLSD AMRDVELLKE KLTGLELAQE EANSLSNMVH SDNVRLEHDV AFLKAVLDDT QKELHSTRGV LAGERARAFQ LQVEVFHLKQ RLQSLENRAA
701: TPRKPFHV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WWX4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.