Factsheet for VIT_05s0020g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058372	Potato	mitochondrion	35.29	79.06
Solyc01g067480.2.1	Tomato	mitochondrion	67.78	73.97
KRH02216	Soybean	mitochondrion	70.71	71.61
KRH11220	Soybean	mitochondrion	71.27	71.17
KRH21038	Soybean	mitochondrion	69.87	70.56
KRH50909	Soybean	nucleus	70.43	69.46
CDY13903	Canola	mitochondrion	63.32	67.36
Bra002170.1-P	Field mustard	mitochondrion	63.74	65.29
CDX92598	Canola	mitochondrion	63.74	65.29
PGSC0003DMT400050298	Potato	cytosol, plastid	33.89	64.63
AT5G18590.1	Thale cress	mitochondrion	63.18	63.98
PGSC0003DMT400058369	Potato	mitochondrion	26.78	60.95
GSMUA_Achr3P23920_001	Banana	mitochondrion	59.69	60.2
GSMUA_Achr5P26950_001	Banana	mitochondrion, nucleus	56.07	56.46
TraesCSU01G068300.1	Wheat	mitochondrion	53.14	55.95
OQU83951	Sorghum	mitochondrion	53.14	55.46
TraesCS4D01G147200.1	Wheat	mitochondrion	52.86	55.41
TraesCS4A01G167800.1	Wheat	mitochondrion	52.72	55.26
KXG23613	Sorghum	mitochondrion	53.0	54.91
HORVU4Hr1G032550.32	Barley	mitochondrion	51.74	54.16
Os12t0538800-01	Rice	mitochondrion, nucleus	52.58	54.01
Zm00001d048718_P010	Maize	mitochondrion	52.02	53.67
TraesCS5A01G094400.1	Wheat	mitochondrion	50.91	53.13
TraesCS5B01G100500.1	Wheat	mitochondrion	50.77	53.06
TraesCS5D01G106700.1	Wheat	mitochondrion	50.49	52.77
HORVU5Hr1G025430.25	Barley	mitochondrion	47.14	48.35
Os11t0657000-01	Rice	mitochondrion	10.88	48.15
Zm00001d023868_P004	Maize	plasma membrane, plastid, vacuole	50.21	47.06
VIT_13s0019g05290.t01	Wine grape	cytosol	20.22	28.54
VIT_14s0060g02410.t01	Wine grape	plastid	23.99	25.52
VIT_12s0057g01080.t01	Wine grape	cytosol	10.6	23.24
VIT_14s0060g01090.t01	Wine grape	nucleus	15.9	17.81
VIT_17s0000g10130.t01	Wine grape	nucleus	14.92	15.69
VIT_13s0074g00620.t01	Wine grape	cytosol	12.13	15.65
VIT_17s0000g05150.t01	Wine grape	cytosol	11.99	14.21
VIT_10s0116g01770.t01	Wine grape	cytosol	13.81	9.5

Protein Annotations

EntrezGene:100264848	wikigene:100264848	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CBI26099	ProteinID:CBI26099.3
ncoils:Coil	UniProt:D7T6H8	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100264848	wikigene:LOC100264848	PFAM:PF01344	PFAM:PF13418
PANTHER:PTHR23244	PANTHER:PTHR23244:SF308	SUPFAM:SSF117281	SUPFAM:SSF57997	UniParc:UPI0001BE2B1A	ArrayExpress:VIT_05s0020g01740
EnsemblPlantsGene:VIT_05s0020g01740	EnsemblPlants:VIT_05s0020g01740.t01	RefSeq:XP_002275331	RefSeq:XP_002275331.1	RefSeq:XP_003631976	RefSeq:XP_003631976.1

Description

No Description!

Coordinates

chr5:-:3456770..3469069

Molecular Weight (calculated)

78808.5 Da

IEP (calculated)

8.727

GRAVY (calculated)

-0.464

Length

717 amino acids

Sequence
(BLAST)

001: MFGFSRRRMK LGRLKVQLAD SAQGTRSPIK QSKRTSNTNN GESGGRASGQ SDELNCQYSS DAPEANNTTT GKSENWMVLS IAGDKPTPRF NHAAAVIGNK
101: MVVVGGESEN GLLEDVQVLN FDRFTWSAPS SKIYLSPTSL PLKIPACKGH SLVSWGQKVL LVGGKTEPGS ERVSVWAFDI ETECWSLMEA KGDIPVARSG
201: HTVVRASSVL ILFGGEDSKR RKLNDLHMFD LKSLTWLPLH CTGTGPSPRS NHVAALYDDK ILFIFGGGSK SRTLNDLYSL DFETMIWSRI KKKRGFPSPR
301: AGCCGVLCGT KWYIAGGGSR KKRHAETLIY DVLKVEWSVI AGPTSSITTN KGFSLVLVQH KEKDFLVAFG GTKKEPSNEV EVLIKEKNEV SISRRSTLNK
401: GSELFLSENR SSSAGLASQL SNGAPQHPVE SVMRQNLASA IEQHGSGRKS LSESSLVDPN PAPGNVSLRK QFHNEEEYNT AVKTLRSLED ECYSSQASEH
501: RMKLFDTGIH GSLAGCKINV DEIPSVLDSE NSNAYNQGNG NLLVDNDDEV FPESHGKSVA FSAPSSIYQL YETKMAALIR KNGILEGQLT AALASREAVE
601: KNLSSVLKNR QEMEKKLADT LKEMEMLKEK LAGVELAQEE ANNLSNMVHS DNVRLEHDVA FLKAVLDDTQ KELHSTRGVL AGERARAFQL QVEVFHLKQR
701: LQSMENRAPT PRKPFHV

Best Arabidopsis Sequence Match ( AT5G18590.1 )
(BLAST)

001: MFSFSKRRMR LGRVKKVQLS DSVQGYKSPL RVTKRADSSS NEAAVAATSY SDELDFQPSS GNSENWMVLS VNGEKPAPRF NHAAATIGNK MIVVGGESGS
101: GLLDDVQVLN FDSCTWSTAS SKVYLSPSSL PLMIPAWKGH CLVSWGKKVL LVGGKTDPSS DRVSVWAFDT DSECWSLMDA KGDLPVSRSG HTVVRASSVL
201: ILFGGEDSKK RKLNDLHMFD LKSSTWLPLN CTGTRPCARS HHVATLFDDK ILFVFGGSGK NKTLNDLYSL DFETMVWSRI KIRGFHPSPR AGSCGVLCGT
301: KWYITGGGSR KKRHAETLVF DILKVEWSVA SISSQSSVTS NKGFSLVLLQ HKDKDFLVAF GGTKKDPSNQ VDAFTIDKNK SESPTHPQTT SKKNPGRLLF
401: GKRSSSSAVL TSDESVKASS QRLIDSVARQ KLASAIEEHG GSGRRSLSEI AFGDHRNPPS GNVSLRKQFS TEEEYRAVIE PAKCSEEDIS VPPPTTDDNT
501: GGAKITAEKT LSMVSDREIL SLQKQCSETY PLENVDGALI FQEMDNINFA GSASSSSVYQ FHEAKMTALI RRNGILEGQL EAALAGREAA ERNVSVALRS
601: KQETDKKLSD AMRDVELLKE KLTGLELAQE EANSLSNMVH SDNVRLEHDV AFLKAVLDDT QKELHSTRGV LAGERARAFQ LQVEVFHLKQ RLQSLENRAA
701: TPRKPFHV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WWX4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.