Factsheet for Solyc04g015680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070070	Potato	cytosol, nucleus, peroxisome	57.16	97.03
GSMUA_Achr2P17790_001	Banana	cytosol	14.93	77.96
VIT_08s0007g08490.t01	Wine grape	cytosol	74.05	74.51
VIT_08s0007g08480.t01	Wine grape	cytosol	71.88	72.33
KRH66936	Soybean	cytosol	71.47	71.99
KRG95264	Soybean	cytosol	71.47	71.99
AT2G41790.1	Thale cress	cytosol	67.35	67.42
CDX72028	Canola	cytosol	38.52	67.15
Solyc04g015690.2.1	Tomato	cytosol	67.04	66.77
CDY48762	Canola	cytosol	66.01	66.08
Bra004649.1-P	Field mustard	cytosol	65.81	65.88
CDX79914	Canola	cytosol	65.71	65.77
GSMUA_Achr2P17800_001	Banana	cytosol	51.08	65.44
AT3G57470.2	Thale cress	cytosol	64.47	64.8
Bra007329.1-P	Field mustard	cytosol	63.75	64.41
CDY06103	Canola	cytosol	64.47	64.07
TraesCS2B01G225800.2	Wheat	cytosol	64.26	63.22
Os07t0570300-01	Rice	plastid	64.26	63.16
CDX88949	Canola	cytosol	63.34	63.14
TraesCS2A01G198400.1	Wheat	cytosol, golgi	64.16	63.12
TraesCS2D01G206200.1	Wheat	cytosol, golgi, unclear	64.16	63.12
KXG36518	Sorghum	cytosol	64.37	62.88
HORVU2Hr1G038720.19	Barley	extracellular	60.04	62.82
CDY31008	Canola	cytosol	62.92	62.73
Bra014622.1-P	Field mustard	cytosol	62.92	62.73
Zm00001d021846_P016	Maize	cytosol	64.06	62.45
Os07t0570500-01	Rice	cytosol, plasma membrane	62.62	61.66
Os07t0570100-01	Rice	cytosol, plasma membrane	62.31	60.99
CDY61872	Canola	cytosol	61.9	60.77
CDY72352	Canola	cytosol, peroxisome	20.39	58.93
EES01562	Sorghum	cytosol	59.32	58.9
TraesCS3B01G347600.1	Wheat	cytosol	58.5	58.74
TraesCS3D01G312900.2	Wheat	cytosol	58.39	58.7
TraesCS3A01G318300.2	Wheat	cytosol	58.08	58.32
HORVU3Hr1G076480.7	Barley	cytosol	57.47	57.76
Os01t0778800-01	Rice	plasma membrane	57.88	57.76
Zm00001d043274_P008	Maize	plastid	57.88	57.17
KRH15819	Soybean	extracellular	10.2	55.62
Os01t0779100-00	Rice	plasma membrane	49.23	55.58
CDY33819	Canola	cytosol, extracellular	55.51	55.51
Zm00001d012627_P001	Maize	cytosol	14.32	54.72
Zm00001d012628_P001	Maize	cytosol	10.5	53.12
AT3G57460.1	Thale cress	cytosol, extracellular	13.7	52.16
CDY33824	Canola	extracellular	4.63	34.35
Solyc02g043860.2.1	Tomato	cytosol	28.63	30.15
CDY54849	Canola	cytosol	3.6	20.47
CDY43076	Canola	cytosol	14.73	19.94

Protein Annotations

MapMan:19.4.5.4.2	Gene3D:3.30.830.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222
GO:GO:0005488	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
GO:GO:0046872	UniProt:K4BQ70	MEROPS:M16.017	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193
PFAM:PF16187	ScanProsite:PS00143	PANTHER:PTHR43690	PANTHER:PTHR43690:SF7	InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS
InterPro:Peptidase_M16_C	InterPro:Peptidase_M16_M	SUPFAM:SSF63411	EnsemblPlantsGene:Solyc04g015680.2	EnsemblPlants:Solyc04g015680.2.1	UniParc:UPI0002766D90

Description

No Description!

Coordinates

chr4:+:5956632..5977381

Molecular Weight (calculated)

112391.0 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.382

Length

971 amino acids

Sequence
(BLAST)

001: MAVGKKEENM AVEIVKPRID KRDYRRIVLQ NNLEILLISD PETDKCAASM NVCVGAFSDP EGLEGLAHFL EHMLFYASEK YPVEDSYSKY ITENGGSTNA
101: FTSSEDTNYY FEVNADGFEE ALDRFAQFFI KPLMSADATT REIKAVDSEH QKNLLSDPWR MNQLQKHLSA ENHPYHKFST GSWDTLEVRP KERGIDTRQE
201: LLKFYSENYS ANLMHLVVYS KDSLDKVEQL VRGKFQDIRN IDRNQIHFTG QPCIMEHLQI LVRAVPIKQG HKLKIIWPIT PGIHHYKEGP CRYLGHLIGH
301: EGEGSLFYVL KKLGWATSLS AGESDWTNEF SFFKVAIDLT DAGQDHFEDI MGLLFKYIHL LQQAGASKWI FEELSAICET AFHYQDKIRP SDYVVNVAMN
401: MQHYPPEDWL VASSLPSKFN PSIIQSFLNE LNPDNVRIFW ESTKFEGNTS MTEPWYGTAY SIEKVGGDSI KQWMEHAPSE ELHLPAPNVF IPTDLSLKPV
501: FEKTKVPILL RKSPYSRLWY KPDTAFSSPK AYVMIDFSCP YCGHSPEAEV LTEIFTRLLM DYLNEYAYNA QVAGLYYDIS KTNSGFQLTL FGYNDKLRVL
601: LEAVIEKVAK FEVKPDRFSV VKELVTKQYQ NFKFQQPYQQ VMYYCSLLLK DNIWPWNEEL EVLPHLKVDD LVKFYPLLMA RSFMECYVAG NVEQAEAESM
701: IQLIEDVFFK GPQSISKPLF ASQHLTNRVV NLERGVNYVY AAEGLNPSDE NSALVHYIQV HQDDFMLNVK LQLFALIAKQ PAFHQLRSVE QLGYITVLMQ
801: RSDSGVHGVQ FIVQSTAKDP KYIDTRVELF MKMFESKLYE MTSDEFKNNV NALIDMKLEK HKNLREESRF YWREISDGTL KFDRRDREIV ALKQLTQKEL
901: TDFFDEYIKV GVPRKKALSV RVYGSSHSSQ FQAHKNEQME PNAVQIEEIF SFRRSRPLYS SFKGGFGHVR L

Best Arabidopsis Sequence Match ( AT2G41790.1 )
(BLAST)

001: MAVEKSNTTV GGVEILKPRT DNREYRMIVL KNLLQVLLIS DPDTDKCAAS MSVSVGSFSD PQGLEGLAHF LEHMLFYASE KYPEEDSYSK YITEHGGSTN
101: AYTASEETNY HFDVNADCFD EALDRFAQFF IKPLMSADAT MREIKAVDSE NQKNLLSDGW RIRQLQKHLS KEDHPYHKFS TGNMDTLHVR PQAKGVDTRS
201: ELIKFYEEHY SANIMHLVVY GKESLDKIQD LVERMFQEIQ NTNKVVPRFP GQPCTADHLQ ILVKAIPIKQ GHKLGVSWPV TPSIHHYDEA PSQYLGHLIG
301: HEGEGSLFHA LKTLGWATGL SAGEGEWTLD YSFFKVSIDL TDAGHEHMQE ILGLLFNYIQ LLQQTGVCQW IFDELSAICE TKFHYQDKIP PMSYIVDIAS
401: NMQIYPTKDW LVGSSLPTKF NPAIVQKVVD ELSPSNFRIF WESQKFEGQT DKAEPWYNTA YSLEKITSST IQEWVQSAPD VHLHLPAPNV FIPTDLSLKD
501: ADDKETVPVL LRKTPFSRLW YKPDTMFSKP KAYVKMDFNC PLAVSSPDAA VLTDIFTRLL MDYLNEYAYY AQVAGLYYGV SLSDNGFELT LLGYNHKLRI
601: LLETVVGKIA NFEVKPDRFA VIKETVTKEY QNYKFRQPYH QAMYYCSLIL QDQTWPWTEE LDVLSHLEAE DVAKFVPMLL SRTFIECYIA GNVENNEAES
701: MVKHIEDVLF NDPKPICRPL FPSQHLTNRV VKLGEGMKYF YHQDGSNPSD ENSALVHYIQ VHRDDFSMNI KLQLFGLVAK QATFHQLRTV EQLGYITALA
801: QRNDSGIYGV QFIIQSSVKG PGHIDSRVES LLKNFESKLY EMSNEDFKSN VTALIDMKLE KHKNLKEESR FYWREIQSGT LKFNRKEAEV SALKQLQKQE
901: LIDFFDEYIK VGAARKKSLS IRVYGSQHLK EMASDKDEVP SPSVEIEDIV GFRKSQPLHG SFRGCGQPKL

Arabidopsis Description

PXM16Insulin-degrading enzyme-like 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O22941]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.