Factsheet for Solyc04g016360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033074	Potato	cytosol	98.24	98.24
VIT_08s0007g09010.t01	Wine grape	cytosol	85.92	83.85
KRH33206	Soybean	nucleus	83.45	83.45
KRH72035	Soybean	nucleus	83.1	82.81
Bra004627.1-P	Field mustard	cytosol	82.39	82.69
CDX79930	Canola	cytosol	81.69	82.56
CDY23842	Canola	cytosol	81.69	82.27
AT2G41530.1	Thale cress	cytosol	80.99	80.99
CDY22529	Canola	cytosol	80.28	80.28
CDY35409	Canola	cytosol	80.28	80.28
Bra000230.1-P	Field mustard	cytosol	79.23	79.23
GSMUA_Achr5P08110_001	Banana	plasma membrane	30.99	77.88
EES02036	Sorghum	cytosol	70.77	70.77
TraesCS3B01G522300.1	Wheat	plastid	72.18	70.69
TraesCS3A01G478800.2	Wheat	plastid	71.83	70.34
TraesCS3D01G473000.1	Wheat	plastid	71.48	70.0
Zm00001d011891_P001	Maize	extracellular	71.48	70.0
Os01t0939700-01	Rice	plastid	70.77	68.84
GSMUA_Achr5P08120_001	Banana	cytosol, mitochondrion, nucleus	16.55	63.51
Zm00001d028378_P001	Maize	mitochondrion	18.31	57.78
Zm00001d042151_P001	Maize	cytosol, nucleus, plastid, vacuole	16.55	51.65
Zm00001d042150_P001	Maize	cytosol	32.39	49.73

Protein Annotations

KEGG:00680+3.1.2.12	Gene3D:3.40.50.1820	MapMan:50.3.1	InterPro:AB_hydrolase	InterPro:Esterase_put	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0018738
GO:GO:0046294	GO:GO:0046686	GO:GO:0048046	GO:GO:0052689	InterPro:IPR029058	UniProt:K4BQD6
PFAM:PF00756	PANTHER:PTHR10061	InterPro:S-formylglutathione_hydrol	MEROPS:S09.A38	SUPFAM:SSF53474	EnsemblPlantsGene:Solyc04g016360.2
EnsemblPlants:Solyc04g016360.2.1	TIGRFAMs:TIGR02821	UniParc:UPI0002767165	SEG:seg	:	:

Description

S-formylglutathione hydrolase [Source:UniProtKB/TrEMBL;Acc:K4BQD6]

Coordinates

chr4:+:7158486..7165657

Molecular Weight (calculated)

32090.9 Da

IEP (calculated)

6.234

GRAVY (calculated)

-0.323

Length

284 amino acids

Sequence
(BLAST)

001: MEFKPTEISI SKMFGGYNKR YKHYSPTLGC SMNFHIFFPP SSSPSLKFPV LYWLSGLTCT DENFIAKSGA QRAASSEGVA LIVPDTSPRG LNVEGESDSW
101: DFGVGAGFYL NATQEKWKNW KMYDYVVKEL PTLLHENFPE LDTSRASIFG HSMGGHGALT IYLKNLDKYK SVSAFAPIAN PVNCPWGLKA FTNYLGENKA
201: DWEEYDATCL VSKYNDVSAT ILIDQGEDDK FYKDQLLPQK FEEACKKVNV PLLLRLQPGY DHSYFFIATF IDDHIRHHAQ ALNL

Best Arabidopsis Sequence Match ( AT2G41530.1 )
(BLAST)

001: MASGLSEIGS TKMFDGYNKR YKHFSETLGC SMTFSIYFPP SASSSHKSPV LYWLSGLTCT DENFIIKSGA QRAASTHGIA LVAPDTSPRG LNVEGEADSY
101: DFGVGAGFYL NATQEKWKNW RMYDYVVKEL PKLLSENFSQ LDTTKASISG HSMGGHGALT IYLRNLDKYK SVSAFAPITN PINCAWGQKA FTNYLGDNKA
201: AWEEYDATCL ISKYNNLSAT ILIDQGENDQ FYPDQLLPSK FEEACKKVNA PLLLRLHPGY DHSYYFIATF IEDHISHHAQ ALEL

Arabidopsis Description

SFGHS-formylglutathione hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q8LAS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.