Factsheet for GSMUA_Achr5P08110_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028378_P001	Maize	mitochondrion	43.36	54.44
Zm00001d042151_P001	Maize	cytosol, nucleus, plastid, vacuole	36.28	45.05
VIT_08s0007g09010.t01	Wine grape	cytosol	81.42	31.62
Solyc04g016360.2.1	Tomato	extracellular	77.88	30.99
KRH33206	Soybean	nucleus	77.88	30.99
PGSC0003DMT400033074	Potato	cytosol	77.88	30.99
KRH72035	Soybean	nucleus	76.99	30.53
AT2G41530.1	Thale cress	cytosol	72.57	28.87
CDY23842	Canola	cytosol	71.68	28.72
Bra004627.1-P	Field mustard	cytosol	71.68	28.62
CDX79930	Canola	cytosol	70.8	28.47
Bra000230.1-P	Field mustard	cytosol	69.03	27.46
CDY35409	Canola	cytosol	69.03	27.46
CDY22529	Canola	cytosol	69.03	27.46
EES02036	Sorghum	cytosol	63.72	25.35
Zm00001d011891_P001	Maize	extracellular	63.72	24.83
TraesCS3A01G478800.2	Wheat	plastid	62.83	24.48
TraesCS3B01G522300.1	Wheat	plastid	62.83	24.48
TraesCS3D01G473000.1	Wheat	plastid	62.83	24.48
Os01t0939700-01	Rice	plastid	61.95	23.97
GSMUA_Achr5P08120_001	Banana	cytosol, mitochondrion, nucleus	0.0	0.0
Zm00001d042150_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00680+3.1.2.12	Gene3D:3.40.50.1820	MapMan:50.3.1	InterPro:AB_hydrolase	InterPro:Esterase_put	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0018738	GO:GO:0046294	EnsemblPlantsGene:GSMUA_Achr5G08110_001	EnsemblPlants:GSMUA_Achr5P08110_001	EnsemblPlants:GSMUA_Achr5T08110_001	InterPro:IPR029058
UniProt:M0SWP0	PFAM:PF00756	PANTHER:PTHR10061	InterPro:S-formylglutathione_hydrol	SUPFAM:SSF53474	UniParc:UPI000296AD6D

Description

S-formylglutathione hydrolase [Source:GMGC_GENE;Acc:GSMUA_Achr5G08110_001]

Coordinates

chr5:+:5858925..5861152

Molecular Weight (calculated)

12353.5 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.415

Length

113 amino acids

Sequence
(BLAST)

001: MEEKPTEISS SKMFGGYNRR YRHFSPTLGC SMTFTVYVPP PSSPSQKFPI LYWLSGLTCT DENFIMKSGA QRAASGEGIA LVAPDTSPRG LNVEGEADSW
101: DFGVGRSITN TPH

Best Arabidopsis Sequence Match ( AT2G41530.1 )
(BLAST)

001: MASGLSEIGS TKMFDGYNKR YKHFSETLGC SMTFSIYFPP SASSSHKSPV LYWLSGLTCT DENFIIKSGA QRAASTHGIA LVAPDTSPRG LNVEGEADSY
101: DFGVGAGFYL NATQEKWKNW RMYDYVVKEL PKLLSENFSQ LDTTKASISG HSMGGHGALT IYLRNLDKYK SVSAFAPITN PINCAWGQKA FTNYLGDNKA
201: AWEEYDATCL ISKYNNLSAT ILIDQGENDQ FYPDQLLPSK FEEACKKVNA PLLLRLHPGY DHSYYFIATF IEDHISHHAQ ALEL

Arabidopsis Description

SFGHS-formylglutathione hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q8LAS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.