CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 4
vacuole 1
extracellular 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33206	Soybean	nucleus	95.09	95.42
Solyc04g016360.2.1	Tomato	extracellular	82.81	83.1
PGSC0003DMT400033074	Potato	cytosol	82.81	83.1
VIT_08s0007g09010.t01	Wine grape	cytosol	83.16	81.44
Bra004627.1-P	Field mustard	cytosol	80.0	80.57
AT2G41530.1	Thale cress	cytosol	80.0	80.28
CDX79930	Canola	cytosol	78.95	80.07
CDY23842	Canola	cytosol	78.95	79.79
CDY22529	Canola	cytosol	77.89	78.17
Bra000230.1-P	Field mustard	cytosol	77.54	77.82
CDY35409	Canola	cytosol	77.54	77.82
GSMUA_Achr5P08110_001	Banana	plasma membrane	30.53	76.99
TraesCS3B01G522300.1	Wheat	plastid	75.44	74.14
Zm00001d011891_P001	Maize	extracellular	74.74	73.45
EES02036	Sorghum	cytosol	72.98	73.24
TraesCS3A01G478800.2	Wheat	plastid	74.39	73.1
TraesCS3D01G473000.1	Wheat	plastid	74.04	72.76
Os01t0939700-01	Rice	plastid	71.58	69.86
GSMUA_Achr5P08120_001	Banana	cytosol, mitochondrion, nucleus	17.54	67.57
Zm00001d028378_P001	Maize	mitochondrion	20.35	64.44
Zm00001d042151_P001	Maize	cytosol, nucleus, plastid, vacuole	16.84	52.75
Zm00001d042150_P001	Maize	cytosol	32.63	50.27

Protein Annotations

KEGG:00680+3.1.2.12	EntrezGene:100796669	Gene3D:3.40.50.1820	MapMan:50.3.1	InterPro:AB_hydrolase	EMBL:ACUP02001153
InterPro:Esterase_put	EnsemblPlantsGene:GLYMA_02G186700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0018738	GO:GO:0046294	GO:GO:0052689	UniProt:I1JGB2	InterPro:IPR029058
EnsemblPlants:KRH72035	ProteinID:KRH72035	ProteinID:KRH72035.1	PFAM:PF00756	PANTHER:PTHR10061	MetaCyc:PWY-1801
InterPro:S-formylglutathione_hydrol	MEROPS:S09.A38	SUPFAM:SSF53474	TIGRFAMs:TIGR02821	UniParc:UPI0002337351	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:34053264..34063869

Molecular Weight (calculated)

32123.0 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.358

Length

285 amino acids

Sequence
(BLAST)

001: MDTKPTEISS GKMFGGYNKR FKHFSLTLGC SMNFHIYFPP SPSPSHKFPV LYFLSGLTCT DENFIFKSGA QRAASAEGVA LVAPDTSPRG LNVEGEADSW
101: DLGVGAGFYL NATQEKWKNW RMYDYVVKEL PKLLSDNFPQ LEISKASIFG HSMGGHGALT IFLKNQDKYK SVSAFAPIAN PINCPWGQKA FSNYLGDNKS
201: EWEDYDATRL VTKFPNVSST ILIDQGEDDK FLPDQLLPHK FEEACKKANV PLLLRFQPGY DHLYYFIATF IDDHIRHHAQ ALRLN

Best Arabidopsis Sequence Match ( AT2G41530.1 )
(BLAST)

001: MASGLSEIGS TKMFDGYNKR YKHFSETLGC SMTFSIYFPP SASSSHKSPV LYWLSGLTCT DENFIIKSGA QRAASTHGIA LVAPDTSPRG LNVEGEADSY
101: DFGVGAGFYL NATQEKWKNW RMYDYVVKEL PKLLSENFSQ LDTTKASISG HSMGGHGALT IYLRNLDKYK SVSAFAPITN PINCAWGQKA FTNYLGDNKA
201: AWEEYDATCL ISKYNNLSAT ILIDQGENDQ FYPDQLLPSK FEEACKKVNA PLLLRLHPGY DHSYYFIATF IEDHISHHAQ ALEL

Arabidopsis Description

SFGHS-formylglutathione hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q8LAS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.