Factsheet for Solyc01g006450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081904	Potato	plastid	98.72	98.72
VIT_06s0004g01310.t01	Wine grape	plastid	81.12	81.12
KRH29159	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	80.61	80.61
Solyc10g078740.1.1	Tomato	plastid	77.04	77.04
KRH46610	Soybean	plastid	75.77	75.57
CDY18037	Canola	plastid	70.92	75.54
CDY33402	Canola	plastid	70.66	75.07
AT2G05990.1	Thale cress	plastid	73.98	74.36
TraesCS5A01G172700.1	Wheat	plastid	70.66	74.06
KXG25034	Sorghum	plastid	69.9	73.85
Os08t0327400-01	Rice	plastid	70.41	73.6
Zm00001d019926_P004	Maize	plastid	70.15	73.53
KXG35263	Sorghum	plastid	70.15	73.53
HORVU7Hr1G085220.11	Barley	plastid	69.64	73.39
TraesCS5B01G170100.1	Wheat	golgi, plastid	69.9	73.26
TraesCS5D01G177200.1	Wheat	plastid	69.9	73.26
CDX93100	Canola	plastid	73.21	72.84
TraesCS7D01G352900.1	Wheat	golgi, plastid	69.64	72.61
TraesCS7A01G370200.1	Wheat	plastid	69.64	72.61
CDY50414	Canola	plastid	70.66	72.51
Os09t0277800-01	Rice	plastid	68.62	72.51
TraesCS7B01G258300.1	Wheat	plastid	69.39	72.34
GSMUA_Achr1P19640_001	Banana	plastid	70.41	72.25
GSMUA_Achr4P19270_001	Banana	plastid	70.41	72.06
KRG99594	Soybean	cytosol	76.53	69.93
Bra013160.1-P	Field mustard	plastid	68.62	69.87
Bra013159.1-P	Field mustard	plastid	68.11	69.53
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	50.26	69.12
KRH24187	Soybean	nucleus	79.08	67.25
Zm00001d049975_P001	Maize	plastid	65.05	66.75
HORVU5Hr1G053010.2	Barley	plastid	70.15	61.52
GSMUA_Achr3P11700_001	Banana	plastid	44.39	58.59
Zm00001d030275_P001	Maize	plastid	12.24	34.53
Zm00001d030276_P001	Maize	plastid	12.24	34.53
Zm00001d030277_P001	Maize	cytosol, plastid	10.2	33.61
Zm00001d030274_P001	Maize	cytosol	3.06	17.65

Protein Annotations

EnsemblPlants:Solyc01g006450.2.1	EnsemblPlantsGene:Solyc01g006450.2	Gene3D:1.10.8.400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43159	PANTHER:PTHR43159:SF1	PFAM:PF13561	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI00027620C4	UniProt:K4ASL1	MapMan:5.1.4.5	:	:	:

Description

No Description!

Coordinates

chr1:+:1058119..1063305

Molecular Weight (calculated)

41918.0 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.009

Length

392 amino acids

Sequence
(BLAST)

001: MAASAASSFQ ITIARPSIFS TKRITSFCST KFGGETQKLS CNRLASSCHV SSIQHFWRSF TSTTQKFQKV VTKAKSEADD SKPASVLPID LRGKRAFIAG
101: IADDNGYGWA IAKSLAAAGA EILVGTWVPA LNIFETSLRR GKFDESRVLP DGSLMEITKV YPLDAVFDSL EDVPEDIKTN KRYAGSSKWT VSEVAESVKE
201: DFGSIDILVH SLANGPEVTK PLLETSRRGY LAAISASSYS YVSLLKHFLP IMNPGGSSIS LTYIASERII PGYGGGMSSA KAALESDTRV LAFEAGRKQK
301: VRVNTISAGP LRSRAAKAIG FIDMMIDYSI ANAPLQRELS ADEVGNTAAF LASPLASAIT GAVIYVDNGL NAMGVGVDSP IFKDLNIPKS TE

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.