Factsheet for TraesCS5A01G172700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G170100.1	Wheat	golgi, plastid	98.66	98.66
TraesCS5D01G177200.1	Wheat	plastid	98.13	98.13
Os09t0277800-01	Rice	plastid	89.04	89.76
KXG35263	Sorghum	plastid	87.17	87.17
Zm00001d019926_P004	Maize	plastid	85.56	85.56
TraesCS7A01G370200.1	Wheat	plastid	83.42	82.98
PGSC0003DMT400029759	Potato	extracellular	70.32	82.45
HORVU5Hr1G053010.2	Barley	plastid	98.4	82.33
GSMUA_Achr1P19640_001	Banana	plastid	78.88	77.23
GSMUA_Achr4P19270_001	Banana	plastid	78.34	76.5
Solyc10g078740.1.1	Tomato	plastid	75.67	72.19
CDY33402	Canola	plastid	70.86	71.82
CDY18037	Canola	plastid	70.59	71.74
Solyc01g006450.2.1	Tomato	plastid	74.06	70.66
PGSC0003DMT400081904	Potato	plastid	74.06	70.66
VIT_06s0004g01310.t01	Wine grape	plastid	73.8	70.41
CDX93100	Canola	plastid	73.8	70.05
AT2G05990.1	Thale cress	plastid	72.99	70.0
KRH29159	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	73.26	69.9
CDY50414	Canola	plastid	70.86	69.37
KRH46610	Soybean	plastid	71.93	68.45
Bra013160.1-P	Field mustard	plastid	68.98	67.01
Bra013159.1-P	Field mustard	plastid	68.72	66.93
GSMUA_Achr3P11700_001	Banana	plastid	50.8	63.97
KRG99594	Soybean	cytosol	71.12	62.0
KRH24187	Soybean	nucleus	72.46	58.79
VIT_08s0007g06390.t01	Wine grape	golgi, plasma membrane, vacuole	74.06	55.73

Protein Annotations

EnsemblPlants:TraesCS5A01G172700.1	EnsemblPlantsGene:TraesCS5A01G172700	Gene3D:1.10.8.400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43159	PANTHER:PTHR43159:SF3	PFAM:PF13561	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
TIGR:cd05372	MapMan:5.1.4.5	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:365928939..365934650

Molecular Weight (calculated)

39179.1 Da

IEP (calculated)

9.412

GRAVY (calculated)

0.123

Length

374 amino acids

Sequence
(BLAST)

001: MGASAATGMQ MVAARPCIPA CQRMLGSRSG VSAFGRALST RTGFASCVKT ASSGSLISVS RKRFAVRAMS QGAVQGLPID LRGKRAFIAG IADDNGYGWA
101: IAKALAAAGA EILVGTWVPA LNIFETSLRR GKFDESRKLP DGSLMEITKV YPLDAVFDSL EDVPEDVKAN KRYAGSSKWT VKEVAETVKD DFGSIDILVH
201: SLANGPEVTK PLLETSRSGY LAAVSASSYS FISLLQHFLP IMNPGGASIS LTYIASERTI PGYGGGMSSA KAALESDTRV LAFEAGRKGK IRVNTISAGP
301: LGSRAAKAIG FIEKMIEYSY VNAPLQKELL AEEVGNAAAF LVSPLASAIT GSTVYVDNGL NTMALAVDSP TLST

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.