CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29159	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	80.04	94.13
VIT_06s0004g01310.t01	Wine grape	plastid	68.55	80.61
Solyc01g006450.2.1	Tomato	plastid	67.25	79.08
PGSC0003DMT400081904	Potato	plastid	67.03	78.83
KRH46610	Soybean	plastid	66.38	77.86
KRG99594	Soybean	cytosol	68.33	73.43
CDY18037	Canola	plastid	58.35	73.1
KXG25034	Sorghum	plastid	58.79	73.05
CDY33402	Canola	plastid	58.35	72.9
Os08t0327400-01	Rice	plastid	59.22	72.8
HORVU7Hr1G085220.11	Barley	plastid	58.57	72.58
TraesCS5D01G177200.1	Wheat	plastid	58.79	72.46
TraesCS5A01G172700.1	Wheat	plastid	58.79	72.46
TraesCS5B01G170100.1	Wheat	golgi, plastid	58.57	72.19
TraesCS7D01G352900.1	Wheat	golgi, plastid	58.79	72.07
TraesCS7A01G370200.1	Wheat	plastid	58.79	72.07
KXG35263	Sorghum	plastid	58.35	71.93
Os09t0277800-01	Rice	plastid	57.7	71.7
TraesCS7B01G258300.1	Wheat	plastid	58.35	71.54
AT2G05990.1	Thale cress	plastid	60.52	71.54
Zm00001d019926_P004	Maize	plastid	57.92	71.39
CDX93100	Canola	plastid	60.52	70.81
CDY50414	Canola	plastid	57.92	69.9
GSMUA_Achr1P19640_001	Banana	plastid	57.7	69.63
GSMUA_Achr4P19270_001	Banana	plastid	56.62	68.15
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	41.87	67.72
Bra013160.1-P	Field mustard	plastid	56.18	67.27
Bra013159.1-P	Field mustard	plastid	55.97	67.19
Zm00001d049975_P001	Maize	plastid	54.01	65.18
HORVU5Hr1G053010.2	Barley	plastid	59.65	61.52
GSMUA_Achr3P11700_001	Banana	plastid	38.39	59.6
Zm00001d030275_P001	Maize	plastid	10.63	35.25
Zm00001d030276_P001	Maize	plastid	10.63	35.25
Zm00001d030277_P001	Maize	cytosol, plastid	8.68	33.61
Zm00001d030274_P001	Maize	cytosol	2.82	19.12

Protein Annotations

EMBL:ACUP02007172	EnsemblPlants:KRH24187	EnsemblPlantsGene:GLYMA_12G027300	Gene3D:1.10.8.400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR43159	PANTHER:PTHR43159:SF1	PFAM:PF13561	PRINTS:PR00081	ProteinID:KRH24187
ProteinID:KRH24187.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000233D5F2	UniProt:I1LPJ8	MapMan:5.1.4.5

Description

hypothetical protein

Coordinates

chr12:-:1966769..1972123

Molecular Weight (calculated)

49498.5 Da

IEP (calculated)

9.466

GRAVY (calculated)

0.060

Length

461 amino acids

Sequence
(BLAST)

001: MGHVVPEQRL QYPINSTCEF VLCFRQFQSL SNLQPLQLKK PFAFFSTPHI GSFITIRFRV PSAILHTLKM AATSFSGMQF AMSRSCIPAS QKIADAGAVV
101: LGGKSKIGSW NKLASACHIA SVQPFRRGFT SSSIKSVKSD TKALFEFSAQ SADSGLSIDL KGKRAFIAGV ADDNGYGWAI AKALAAAGAE ILVGTWVPAL
201: NIFESSLRRG KFDISRILPD GSMMEITKVY PLDAVFDNPD DVPEDIKTNK RYAGSSKWTV QEVAESVKED FGSIDILVHS LANGPEVTKP LLETSRNGYL
301: AAISASSYSY VSLLKHFLPI LNPGGSSISL TYIASERIIP GYGGGMSSAK AALESDTRVL AFEAGRKRKI RVNTISAGPL RSRAAKAIGF IDMMIDYSSA
401: NAPLQKEVLA EEVGYTAAFL ASPLASAITG TVLYVDNGLN AMGVGVDSPI FKDLNIPKDQ H

Best Arabidopsis Sequence Match ( AT2G05990.1 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.