Factsheet for VIT_06s0004g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29159	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	83.42	83.42
Solyc01g006450.2.1	Tomato	plastid	81.12	81.12
PGSC0003DMT400081904	Potato	plastid	80.61	80.61
CDY18037	Canola	plastid	73.47	78.26
KRH46610	Soybean	plastid	78.32	78.12
CDY33402	Canola	plastid	73.47	78.05
AT2G05990.1	Thale cress	plastid	77.3	77.69
HORVU7Hr1G085220.11	Barley	plastid	71.68	75.54
KXG35263	Sorghum	plastid	71.94	75.4
CDX93100	Canola	plastid	75.77	75.38
KXG25034	Sorghum	plastid	71.17	75.2
Os08t0327400-01	Rice	plastid	71.94	75.2
Zm00001d019926_P004	Maize	plastid	71.68	75.13
TraesCS7A01G370200.1	Wheat	plastid	71.94	75.0
TraesCS7D01G352900.1	Wheat	golgi, plastid	71.94	75.0
CDY50414	Canola	plastid	72.96	74.87
TraesCS7B01G258300.1	Wheat	plastid	71.43	74.47
Os09t0277800-01	Rice	plastid	70.41	74.39
TraesCS5A01G172700.1	Wheat	plastid	70.41	73.8
GSMUA_Achr1P19640_001	Banana	plastid	71.17	73.04
TraesCS5D01G177200.1	Wheat	plastid	69.64	72.99
TraesCS5B01G170100.1	Wheat	golgi, plastid	69.64	72.99
GSMUA_Achr4P19270_001	Banana	plastid	71.17	72.85
Bra013159.1-P	Field mustard	plastid	70.41	71.88
Bra013160.1-P	Field mustard	plastid	70.41	71.69
KRG99594	Soybean	cytosol	77.81	71.1
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	50.26	69.12
KRH24187	Soybean	nucleus	80.61	68.55
Zm00001d049975_P001	Maize	plastid	65.56	67.28
VIT_08s0007g06390.t01	Wine grape	golgi, plasma membrane, vacuole	80.61	63.58
HORVU5Hr1G053010.2	Barley	plastid	70.15	61.52
GSMUA_Achr3P11700_001	Banana	plastid	45.15	59.6
Zm00001d030275_P001	Maize	plastid	13.01	36.69
Zm00001d030276_P001	Maize	plastid	13.01	36.69
Zm00001d030277_P001	Maize	cytosol, plastid	10.46	34.45
Zm00001d030274_P001	Maize	cytosol	3.32	19.12

Protein Annotations

Gene3D:1.10.8.400	EntrezGene:100241680	wikigene:100241680	Gene3D:3.40.50.720	MapMan:5.1.4.5	ProteinID:CCB43764
ProteinID:CCB43764.1	UniProt:F6GUE3	EMBL:FN594951	EntrezGene:LOC100241680	wikigene:LOC100241680	InterPro:NAD(P)-bd_dom_sf
PFAM:PF13561	PRINTS:PR00081	PANTHER:PTHR43159	PANTHER:PTHR43159:SF1	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC67878	UniParc:UPI000198372A	ArrayExpress:VIT_06s0004g01310	EnsemblPlantsGene:VIT_06s0004g01310	EnsemblPlants:VIT_06s0004g01310.t01	unigene:Vvi.887
RefSeq:XP_002285625	RefSeq:XP_002285625.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:1563409..1568948

Molecular Weight (calculated)

41694.8 Da

IEP (calculated)

9.121

GRAVY (calculated)

0.001

Length

392 amino acids

Sequence
(BLAST)

001: MAATAVSGLQ MATARSHISS SHRIFKAGAA VLGTNSKGRS WAKLASACHI SYFHHFQHSF SSSPIRFDKV VTRAMSEASE KKPTSGLPID LKGKRAFIAG
101: VADDNGYGWA IAKSLAAAGA EILVGTWVPA LNIFETSLRR GKFDESRVLP DGSLMEITKI YPLDAVYDTL EDVPEDVKAN KRYAGSSNWT VQEVAESVKQ
201: DFGSIDILVH SLANGPEVTK PLLETSRKGY LAAISASSYS YVSLLKCFIP IMNPGGSSIS LTYIASERII PGYGGGMSSA KAALESDTRV LAFEAGRKHK
301: IRVNTISAGP LRSRAAKAIG FIDTMIEYSL ANAPLQKELS ADEVGNTAAF LASPLASAIT GAVIYVDNGL NAMGVGLDSP MFADLNIPKD KH

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.