Factsheet for VIT_08s0007g06390.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

cytosol 1
plastid 3
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029759	Potato	extracellular	56.74	88.4
VIT_06s0004g01310.t01	Wine grape	plastid	63.58	80.61
Solyc10g078740.1.1	Tomato	plastid	61.37	77.81
KXG25034	Sorghum	plastid	55.94	74.93
Os08t0327400-01	Rice	plastid	56.14	74.4
HORVU7Hr1G085220.11	Barley	plastid	55.53	74.19
TraesCS5D01G177200.1	Wheat	plastid	55.73	74.06
TraesCS5A01G172700.1	Wheat	plastid	55.73	74.06
TraesCS5B01G170100.1	Wheat	golgi, plastid	55.73	74.06
TraesCS7D01G352900.1	Wheat	golgi, plastid	55.94	73.94
TraesCS7B01G258300.1	Wheat	plastid	55.73	73.67
TraesCS7A01G370200.1	Wheat	plastid	55.73	73.67
GSMUA_Achr1P19640_001	Banana	plastid	56.14	73.04
KXG35263	Sorghum	plastid	54.93	72.99
Zm00001d019926_P004	Maize	plastid	54.73	72.73
Os09t0277800-01	Rice	plastid	53.92	72.24
GSMUA_Achr4P19270_001	Banana	plastid	55.13	71.54
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	39.84	69.47
Zm00001d049975_P001	Maize	plastid	51.11	66.49
HORVU5Hr1G053010.2	Barley	plastid	56.74	63.09
GSMUA_Achr3P11700_001	Banana	plastid	35.81	59.93
Zm00001d030275_P001	Maize	plastid	11.07	39.57
Zm00001d030276_P001	Maize	plastid	11.07	39.57
Zm00001d030277_P001	Maize	cytosol, plastid	9.26	38.66
Zm00001d030274_P001	Maize	cytosol	3.22	23.53

Protein Annotations

Gene3D:1.10.8.400	EntrezGene:100250344	wikigene:100250344	Gene3D:3.40.50.720	MapMan:5.1.4.5	ProteinID:CCB55253
ProteinID:CCB55253.1	UniProt:F6HLJ7	EMBL:FN595991	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100250344	wikigene:LOC100250344	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00081	PANTHER:PTHR43159
PANTHER:PTHR43159:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI00021087FA	ArrayExpress:VIT_08s0007g06390
EnsemblPlantsGene:VIT_08s0007g06390	EnsemblPlants:VIT_08s0007g06390.t01	RefSeq:XP_002279058	RefSeq:XP_002279058.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:20176308..20180506

Molecular Weight (calculated)

53834.2 Da

IEP (calculated)

9.497

GRAVY (calculated)

0.124

Length

497 amino acids

Sequence
(BLAST)

001: MGLFLEFWTC YFQIYSLFGF PEKCSGKGGK ILNPVIQLIY GAPAKPSRES PMTHTFNFFV FSTFPLEPDL LFVMVILISY IVFFKRYIYS CFVIRLLKMA
101: ATANPSMHMA TANPCISSSR KIIKPSTASF VTKVKRAAWS RLTSSSHLSS ARLFFQNSTS TPARFEKVVT KAMADASENK PLPGLPVDLR GKRAFIAGVA
201: DDNGYGWAIA KSLAAAGAEI LIGTWVPALN IFESSLRRGK FDESRKLPDG SLMEITKVYP LDAVFDSLDD VPEDVKTNKR YAGSSNWTVQ EVAESVKQDF
301: GSIDILVHSL ANGPEVTKPL LETSRKGYLA AISASSYSFV SLLKHFLPIM NPGGASISLT YIASERIIPG YGGGMSSAKA SLESDTRVLA FEAGRKHKIR
401: VNTISAGPLG SRAAKAIGFI DMMINYSLAN APLQKELHAG KLIINGTEEV GNAAAFLVSP LASAITGAVV YVDNGLNAMG VGVDSPIFEN LDIPKDH

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.